Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1697 ATGAAGGGGGAGGATAGGGGTAAATACCTGGCCCGTATTCTTAACGCCTGTGCCAAGTTTATTGAATCAGGAAGCATCATGAATGCAGATACTGGACTGGACTATATTGCTCACATTGCCTCCCCTTATGGGGATGCAATGCAGAGAGTAGCCACCTATATTAGTGAAGGTCTAGCTTGCCAAATTCTGAAAAAATTTCATGGCATACCTAAAGCTCTCAGTTTATCAAAAACAATGTCAACCTCTGAAGAACAACTTGTTAAGAAGTCATTCTTTGATCTGTATCCATTTTTAAAGATTGCATATGTGATCACAAGTCATGCCATTGCTGAAGCTATGGAAGGGGAAGAAGTGATCCATGTCATTGATCTAGGTGCATCTGATGCTGCTCAGTGGATTTATCTTATGCAGAGATTAAAAGAAAGCCAAAAGAACCACCCATTTCTAAAAATCACAGGCATACATGAGAATAAGGAAATTTTAGAGCAAGTGACCACTCACTTGAGAGTAGAAGCCGAAAAGTTGAATTTCCATCTCCAATTCAATGCTATTGTAAGAACTATGGAAAATCTTGACCTTGAAGAATTGCCTGTGAAGAAAGGAGAGCCTCTTGCAATCAGCTCAGTACTTCAGCTGCACAAACTTCTGGCCACTGATGATGCAATGGTCTGCAGCAGGAGCTCGCCGGCAGAATCAATGCATCAAAGGACATTTGCTGAGATGATTGGGAAACAAAAAACCAACTCCAGTTCTGTCTCATCATCGTTACAACTTCCTCTATGTGCAACTTCAACCAAGATGATGCACTTTCTAAATGGCCTGTGGAAACTCCAACCTAGAGTGATGGTGATTACTGAACAAGAATCTAATGTTAATTGTTCTTCTTTGACAGAAAGGGTTGACAAAGCATTGGATTTTTACGGTGCATTGTTCAACTGCTTGGAATCAACTGTTTCAACAACACTAGTAGAGAGAATCATAATGGAGAGGACTCTACTAGGGGAAGAAATAAAGAACATTGTTGCATGTGAAGGAGTTGAGAGAAAGGAGAGGCATGAAAAACTTGAGACTTGGATCCCAAGGCTTGAATTGGCTGGGTTTGGGAAGGGACATATTAGCCATCATGGGATGATGCAAGCAACAAAACGGTTGCATGGTTATGGAAATGGATATAAGCTTTGTCAGGAGAATAATTGTTTGTTTGTCTGCTGGAACGATAAGCCACTCTTTTCTGTATCAGTCTGGACGGTTTAG 1254 0.4091 MKGEDRGKYLARILNACAKFIESGSIMNADTGLDYIAHIASPYGDAMQRVATYISEGLACQILKKFHGIPKALSLSKTMSTSEEQLVKKSFFDLYPFLKIAYVITSHAIAEAMEGEEVIHVIDLGASDAAQWIYLMQRLKESQKNHPFLKITGIHENKEILEQVTTHLRVEAEKLNFHLQFNAIVRTMENLDLEELPVKKGEPLAISSVLQLHKLLATDDAMVCSRSSPAESMHQRTFAEMIGKQKTNSSSVSSSLQLPLCATSTKMMHFLNGLWKLQPRVMVITEQESNVNCSSLTERVDKALDFYGALFNCLESTVSTTLVERIIMERTLLGEEIKNIVACEGVERKERHEKLETWIPRLELAGFGKGHISHHGMMQATKRLHGYGNGYKLCQENNCLFVCWNDKPLFSVSVWTV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1697 417 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 416 IPR005202 -
Ssu8g1697 417 Pfam GRAS domain family 11 416 IPR005202 -
Ssu8g1697 417 ProSiteProfiles GRAS family profile. 1 416 IPR005202 -
Ssu8g1697 417 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 3 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1697 Ssu-Chr8 41363099 41364352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1697 1 415 GRAS Transcription Factor Family AT1G50420 45.392 1.46e-130 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu8g1697 GRAS 5.8e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1697 - - zju:107417805 439.884