Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1684 atggCTAAGAAGGGCTGGTTTAGCACGATTAAGAAGCTCTTTATATGGGACACACATTCCTCACAAGATAAGaaggagaaaagaaggtCTTGGATATTTGGGAGGGTTAAGACAAAGAGATTGCCTTCAATTACAGCTCCACCACCATCGAAAGAAACAAGACTAAGTGAAGCTGAGGAAGAACAAAGCAAGCATGCTTTAACAGTGGCCATTGCTTCAGCTGCTGCTGCTGAAGCTGCTATTACCGCTGCTCAGGTTGCTGTTGAGGTTGTTAGGCTTCAATCTGCTAATcaacaatttaaagaaaaacaagaacaacTTCAACCTGTTAAAACTAGGCATGATGCTCCTCATTCCCCAAACCAATGCCAGAGGAAGATGGAAGAATCTTCAGCCGTCAAAATTCAAACAGCATTTAGAGGTTACCTAGCAAGGAAAGCTTTGAGGGCATTGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGTGGCAGAGCTGTGAGACGCCAAGCTATGAGTACTCTGAAGTGCTTGCAGTCCATTGTAAGTATCCAGTCGCAGGTCTTTGCAAGGAGACTCCAAATGGTTGAAGGTAGATGGGATTGTGGTGAACGTGAAGAGATGCAAGGTTCAAGAGACAAGATAATAAGGaTGGACTCAAACAGTGAGAGAAGGTGGGATGACAGCATTTTGTTGAAGGAAGAGGTAGATGCTTCTTGTATAAGCAAGAAAGAAGCAGTTCTTAAGAGAGAACGAGTAAAAGAATACTCATTTAACCACAGGAGGTCAGCTGAAtcagaaagaaataaaataaatggaagaTGGAGGTACTGGATGGAGCAGTGGGTAGACACCCAACTTTGTAAGAGTAAAGAACTTGAAGATTTAGACTCAGTTTTCAGCTCACATTATTCTAGAGCTGGGGAGGAATGTGGAAGGAGACAAATAAAGCTTAGAAATATTCAGAGACAAAATCAGGTAGAAGGATTAGATTCTCCAATACTTGCTTCAAGGAACTCTTTTCCCCACAGAAGCCAGACTTCAGAGGCAGAAGATCACTCAATTCCAACCTCTCCTGCAATTCCAACATACATGACTGCAACAAAATCAACACAAGCTAAAGCAAGATCAAGTAGCTCCCCAAGAGCAAGGACAGGAGTGAATTTTGACATGAACTCTGATAGCTATTCACCATGCAAGAAAAAGCTATCTGTTGTGACTTCTATTAATAGTGAAGTGCTTAGTAATGGCAGGATGGGCAAGCTCAGTAGTAATCACCAAAGGTCTCCTAGCTTAAAGGGCCTTTCAAGACCTCTAAAACTAAGTCAGACAATGAGGGATCTCAGCATTAATTCAGATTGCTCAGTGCCAATTTGA 1374 0.4032 MAKKGWFSTIKKLFIWDTHSSQDKKEKRRSWIFGRVKTKRLPSITAPPPSKETRLSEAEEEQSKHALTVAIASAAAAEAAITAAQVAVEVVRLQSANQQFKEKQEQLQPVKTRHDAPHSPNQCQRKMEESSAVKIQTAFRGYLARKALRALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVSIQSQVFARRLQMVEGRWDCGEREEMQGSRDKIIRMDSNSERRWDDSILLKEEVDASCISKKEAVLKRERVKEYSFNHRRSAESERNKINGRWRYWMEQWVDTQLCKSKELEDLDSVFSSHYSRAGEECGRRQIKLRNIQRQNQVEGLDSPILASRNSFPHRSQTSEAEDHSIPTSPAIPTYMTATKSTQAKARSSSSPRARTGVNFDMNSDSYSPCKKKLSVVTSINSEVLSNGRMGKLSSNHQRSPSLKGLSRPLKLSQTMRDLSINSDCSVPI 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1684 457 MobiDBLite consensus disorder prediction 328 390 - -
Ssu8g1684 457 MobiDBLite consensus disorder prediction 41 60 - -
Ssu8g1684 457 Pfam IQ calmodulin-binding motif 130 149 IPR000048 GO:0005515
Ssu8g1684 457 PANTHER IQ-DOMAIN 5-RELATED 1 451 - -
Ssu8g1684 457 Gene3D - 126 177 - -
Ssu8g1684 457 MobiDBLite consensus disorder prediction 103 129 - -
Ssu8g1684 457 PANTHER IQ-DOMAIN 11 1 451 - -
Ssu8g1684 457 MobiDBLite consensus disorder prediction 328 343 - -
Ssu8g1684 457 SMART iq_5 127 149 IPR000048 GO:0005515
Ssu8g1684 457 MobiDBLite consensus disorder prediction 350 390 - -
Ssu8g1684 457 ProSiteProfiles IQ motif profile. 128 156 IPR000048 GO:0005515
Ssu8g1684 457 MobiDBLite consensus disorder prediction 106 122 - -
Ssu8g1684 457 ProSiteProfiles IQ motif profile. 152 179 IPR000048 GO:0005515
Ssu8g1684 457 Pfam Protein of unknown function (DUF4005) 345 431 IPR025064 -
Ssu8g1684 457 MobiDBLite consensus disorder prediction 416 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1684 Ssu-Chr8 40839333 40841732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1684 3 456 IQD Protein Family AT5G13460 43.659 8.34e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1684 - - gmx:100794802 737.258