Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1677 ATGGATGATGGAAATGCAGAGCTTTCTGATAAGCTTTCAGATAATGTTCTATTTTTGAATCCAGAGTCATCTAGCAGTTTTCAGGCTTCAACATCTGTGAACACAGTTACTGAATTGTGTAGGAGTACCAGCAGAACATGCACCCACACTCACACTTGCAACCCACCTGGCCCTGATGCtgctcacacacacacatgctaTCACACGCACACCCAAGTTTTTGCACCTGAAGATGATGACAGGGACCACACCACCACCAAGCCAAAAAGACCTTCTGGCAACCGAGAAGCGGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCTTACTTGGAGGAGGAAGTTAAGAAATTGCATCTGGTGAATCAGCAACTAGTGAGGAAGCTACAAGGGCAGGCACTTCTTGAAGCAGAATTGGCAAGGTTGAGGAGCATTTTGGCACACCTTAAGGGGAAAATAGACAGTGAATTGGGTGCTTTCCCCTTTCAAAAGCAGTGTAACTCTTCTTACATTTTCAAAGAAGGGGATGCTGGTTTGCTGTCCAGTGCCAGGACAATTGGTCTTCAGTGTCAGAACAATTTGCCATGCTTCCATCCACATGCAGGATCATCATCCCAGGTCAATATTTGTGCATATGGAAAATCCATGATTCCACGGGAAGGAAACTGTCAGCCTGAAATTGTAGATTGTCAAGTAGATGCAAATAACATGACCAGTACTGAAGGACAAACTGTGGAAACAGTGGATCGCCTCATGTCATCTGCATCTCAAGATGGATAA 783 0.4368 MDDGNAELSDKLSDNVLFLNPESSSSFQASTSVNTVTELCRSTSRTCTHTHTCNPPGPDAAHTHTCYHTHTQVFAPEDDDRDHTTTKPKRPSGNREAVRKYREKKKAHTAYLEEEVKKLHLVNQQLVRKLQGQALLEAELARLRSILAHLKGKIDSELGAFPFQKQCNSSYIFKEGDAGLLSSARTIGLQCQNNLPCFHPHAGSSSQVNICAYGKSMIPREGNCQPEIVDCQVDANNMTSTEGQTVETVDRLMSSASQDG 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1677 260 SUPERFAMILY Leucine zipper domain 88 131 IPR046347 GO:0003700|GO:0006355
Ssu8g1677 260 MobiDBLite consensus disorder prediction 74 100 - -
Ssu8g1677 260 SMART brlzneu 77 149 IPR004827 GO:0003700|GO:0006355
Ssu8g1677 260 CDD bZIP 94 141 - -
Ssu8g1677 260 Pfam Basic region leucine zipper 89 139 IPR004827 GO:0003700|GO:0006355
Ssu8g1677 260 PANTHER BASIC LEUCINE ZIPPER 23 1 235 - -
Ssu8g1677 260 Gene3D - 75 151 - -
Ssu8g1677 260 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1677 Ssu-Chr8 40489022 40489804 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1677 43 183 bZIP Transcription Factor Family AT3G51960 55.172 9.14e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu8g1677 bZIP_2 2.6e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1677 K25785 - gmx:100527780 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1677 8 40489022 40489804 Ssu8g1677 8 40489022 40489804 ECH