Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1671 ATGGGTCGAGGGAAGATCGAGATCAAAAGAATCGACAATGCCAGCAGCAGACAAGTCACGTTCTCCAAGCGGAGAACCGGCTTGTTCAAGAAGGCTCAGGAACTTTCCATTCTCTGCGACGCCGAGGTTGCCGTCATAGTTTTCTCCAACACTGGCAAGCTCTTCGAGTTTTCCAGTTCCGGTATGAAGCGAACACTTTCAAGATACAACAAATGCCTTGGTTCTGCAGATGCTGCTGTAGCAGAAAGTAAGACACAGaaggAAGATTCTAAGATGGTGGAGATTCTAAGAGAGGAAATTGCAAAGCTAGAAACAAAGCAATTACAGATGTTGGGTAAGGATCTGACAGCATTGGGTTTAAAGGAATTGCAAAATTTAGAGCAGCAACTTAATGAGGGGTTATTGTCTGTCAAGGAGAGAAAGGAGGAATTACTCATGGAGCAACTGGAGCAATCTAGAGTTCAGGAACAGCGGGTTATGTTGGAGAATGAAACTTTGCGCAGACAGgcaaatattattcatttgcTCTTCTTATTGTGCAATGTTGATCTTCCAGCATCTGTTATCTTTGAATAA 576 0.4201 MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDAEVAVIVFSNTGKLFEFSSSGMKRTLSRYNKCLGSADAAVAESKTQKEDSKMVEILREEIAKLETKQLQMLGKDLTALGLKELQNLEQQLNEGLLSVKERKEELLMEQLEQSRVQEQRVMLENETLRRQANIIHLLFLLCNVDLPASVIFE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1671 191 PANTHER MADS BOX PROTEIN 1 161 - -
Ssu8g1671 191 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu8g1671 191 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Ssu8g1671 191 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu8g1671 191 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Ssu8g1671 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu8g1671 191 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu8g1671 191 Coils Coil 120 143 - -
Ssu8g1671 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu8g1671 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu8g1671 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu8g1671 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu8g1671 191 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Ssu8g1671 191 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 161 - -
Ssu8g1671 191 Coils Coil 86 106 - -
Ssu8g1671 191 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1671 Ssu-Chr8 40058770 40064475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1671 1 169 MADS-box Gene Family AT5G13790 63.314 1.16e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu8g1671 K-box 2.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1671 - - gmx:547732 289.656