Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1663 ATGGCGGAATCTCGCCCCCCTAAGCGCCCCAAAATCACTAGAGGGGACGATGATTATATGCCTGGCAATATACTTGAGATCGAGCTTTGTAATTTCATGACGTTTGATTACTTAAAATGCAAACCTGGACCTCGATTGAATCTTGTAATTGGGCCCAATGGTTCTGGTAAGAGTTCGCTTGTATGTGCTATTGCTCTTGGCCTCTGTGGAGAGCCCCAGTTGCTTGGGCGTGCTACGACTATTGGGGCATATGTGAAGCGGGGAGAAGAATCTGGCTACATTAAGATCACCTTGAGAGGGGACCATAAAGAGGAACATATTACCATTATGCGTAAAATTAAGACTAATAACAAGTCTGAATGGTTGTTCAATGGAAATGTGGTGCCTAAAAAGGATGTGGCTGAAACCATTCAAAGGTTTAACATACAAGTCAATAATTTGACTCAATTTTTACCACAAGACAGGGTCTGTGAGTTTGCGAAGTTAACTCCTGTTCAACTTCTGGAAGAGACTGAAAAGGCTGTTGGTGATCCACAGCTTCCAGAGCAACATCGAGCACTAGTTGATAAAAGTCGTTCATTGAAGCACATTGAGTTGTCTCTAGAGAAAAATGAAGGAACTTTAAAACAGTTGAAGGAACGAAATGCTGAATTAGAGACGGATGTTGAACGTGTTCATCAAAGAGATGAACTTCTTGCCAAGGCTGAagcaatgaaaaagaaattgccATGGCTGAGGTATGATATGAAGCAGGCAGAATACCGGGAAGCTAAGGAGTGTGAGAATGATGCAGCAAAGGCATTGGAGGAAGCTgcaaagttattaaatgatctTAAAGAACCCGTTATgaaacaaaaaaaagagaaggctGCATTAGATGCAAAATGCAAAAAGGTTAGCAGCCATGTAAATGAGAATGCCAAGAAGCGAATGGAACTTATGGAGGAGGAGAACAAATTGGATGTGGAATTACAAGGAAAATACAAAGAAATGGAAGAATTGAGGAGGCAGGAAGAAACTCGACAACAAAGACTTGTAAAAGCTAGGGAGGAACTTGCTATTGCTGAACTTGAACTTGAGAATCTATCCCCTTATGTACCTCCTAAGGGGGAGCTTCAAAGACTAAAAGCTGAAATTGTGGAATTGGATTATTCTGCTAATCAAGTGAGGCAGAATAAGTTACAagcagaaaatgaaataaagtgtAAGAAGTCATCCATGATGCAGATTAAAGAGAGATTGAtggaaatgaataataaaagtaCAAAGTGTTTGCATGTATTGCAAAGATCAGGGGCTGAAAAAATTTTTGAAGCTTATAAATGGGTCCAAGAACATCGGCATGAATTCAATAAGGAGGTTTATGGCCCAGTTTTAGTAGAGGTGAACGTCCCAAATAGGGTTCATGCTGCATATCTAGAGGGTCAAGTGGCTCATTACACTTGGAAGTCCTTCATAACACAAGATTCTGGTGATCGGGATCTTTTGGTGAAACACCTGCAGTTCTTTGATGTACCAGTTTTAAATTATACTGGCGATGATGGCCACCAAAGAGAGCCGCTTGAAATTTCTGAAGATAAGCGTGCACTTGGTATCTACTCCCGGctggatcaaatttttgatgcTCCTATTGCTGTGAAGGAGGTTTTGATTAGCCAGTTTAATCTAGATAATTCATATATTGGATCCAAAGAAACTGATCAGAGTGCTGATGAGGTTCCAAAATTGGGAATTATAGATTTATGGACACCTGAAAATCACTACCATTGGTCCAAGTCTAGATATGGAAATCATGTCTCAGCAGTTGTTCAACAAGTGGAACGCCCACAACTTTTATTGAATAATTTGAATGTTGGAGAAATTGAGAAGCTGAGTTCCCAGCAAAGGGAGCTTGAAGCAGTTGTTACTAATTTGGAGGAAAGTGTTAAAAGGTTTCAAGATGAGGAAAGAAGCTTAGTGAATCAAGCTGCTAATCTTCGTAAACAGTGGgaGGGCATTAGTATTACAGTACAGAATGAGCATAAAAAACGACAAGCAATCATTAGCCGAATTGATCAAAGGAAAGGGTTATTAAAAAGGATGGAGGAACGGGATGATATAGATACTGAGATAACAAAGCTTGTTGAACAGGctacaaaatataacaatcagCGTTTCCATAATGCAATggaaattaagGATCTTCTTGTTGAAGCTGTGAGTTACAGACGGATTTTTATTGAACAACGTATGGcttttgttgaatttgatgcaAAGattggaGAAATGGAGGCCAATCTGAAGCAGCATGAGAATTTTGCCCTGCAAGCATCATTGCACTATGATAACTGTAAGAAAGAATCTGAGAATTGTAGACAGAAGCTTACAGATTCCTTGAAGTATGCTAAATCAATTGCTCGGCTTACACCTGAGCTAAAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAACTGGAAGCAGCTATCCAAGATACCACTTCTCAAGCCAATTCAATCCTCTTTGTCACTCATAACATATTGGAACAATATGAAGATCGTCAACGACAGATAGAAGATCTTGCGGCAAAACTGGAAACAGACAAGAAGGAATCTACACGGTGTTTGGCtgaattaaataacattaagGGAAAATGGCTTCCGACATTGAGAAACCTTGTGGCAAAGATAAATGAAACTTTCAGTTTTAATTTCCAAGAGATGGCTGTTGCTGGAGAAGTTTCACTAGATGAGCATGATATGGACTTTGATCAATTTGGAatacatataaaagttaaattcagAGAAAACGGACAGCTTCAAGTTCTGAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTCCAACAATTAGTGAGAGCAGCAAGCAAGCCAAATACTCCCCAGTGTTTCTTGCTTACCCCGAAATTGTTACCAGATCTACAATATAGTGAGGCATGCAGTATATTGAATGTGATGAATGGCCCTTGGATTGAGCAACCCTCGAAGGTCTGGACTACTGGTGATCGATGGAGTATCATCGCGGGACTTGTTGGAGACACCCAATGTTAA 3159 0.3789 MAESRPPKRPKITRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATTIGAYVKRGEESGYIKITLRGDHKEEHITIMRKIKTNNKSEWLFNGNVVPKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALVDKSRSLKHIELSLEKNEGTLKQLKERNAELETDVERVHQRDELLAKAEAMKKKLPWLRYDMKQAEYREAKECENDAAKALEEAAKLLNDLKEPVMKQKKEKAALDAKCKKVSSHVNENAKKRMELMEEENKLDVELQGKYKEMEELRRQEETRQQRLVKAREELAIAELELENLSPYVPPKGELQRLKAEIVELDYSANQVRQNKLQAENEIKCKKSSMMQIKERLMEMNNKSTKCLHVLQRSGAEKIFEAYKWVQEHRHEFNKEVYGPVLVEVNVPNRVHAAYLEGQVAHYTWKSFITQDSGDRDLLVKHLQFFDVPVLNYTGDDGHQREPLEISEDKRALGIYSRLDQIFDAPIAVKEVLISQFNLDNSYIGSKETDQSADEVPKLGIIDLWTPENHYHWSKSRYGNHVSAVVQQVERPQLLLNNLNVGEIEKLSSQQRELEAVVTNLEESVKRFQDEERSLVNQAANLRKQWEGISITVQNEHKKRQAIISRIDQRKGLLKRMEERDDIDTEITKLVEQATKYNNQRFHNAMEIKDLLVEAVSYRRIFIEQRMAFVEFDAKIGEMEANLKQHENFALQASLHYDNCKKESENCRQKLTDSLKYAKSIARLTPELKKEFLEMPTTIEELEAAIQDTTSQANSILFVTHNILEQYEDRQRQIEDLAAKLETDKKESTRCLAELNNIKGKWLPTLRNLVAKINETFSFNFQEMAVAGEVSLDEHDMDFDQFGIHIKVKFRENGQLQVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTTGDRWSIIAGLVGDTQC 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1663 1052 Gene3D - 846 1022 IPR027417 -
Ssu8g1663 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 18 1049 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Ssu8g1663 1052 Coils Coil 317 351 - -
Ssu8g1663 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 285 IPR027417 -
Ssu8g1663 1052 CDD ABC_SMC5_euk 925 1027 - -
Ssu8g1663 1052 Coils Coil 372 406 - -
Ssu8g1663 1052 Coils Coil 250 277 - -
Ssu8g1663 1052 Gene3D - 23 212 IPR027417 -
Ssu8g1663 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 1003 IPR027417 -
Ssu8g1663 1052 Coils Coil 194 228 - -
Ssu8g1663 1052 Coils Coil 841 864 - -
Ssu8g1663 1052 Coils Coil 621 662 - -
Ssu8g1663 1052 CDD ABC_SMC5_euk 22 179 - -
Ssu8g1663 1052 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1663 Ssu-Chr8 39621275 39698729 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1663 1 1041 Structural Maintenance of Chromosomes family AT5G15920 62.728 0.0 1311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1663 K22803 - gmx:100778678 1874.75