Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1651 ATGATTAGTCTACACGCCACCATGTGGTGGCAACGGTCACTAGTTGGTGACGGACGCATAGGCACACGCATAGAAGACCCTCGTGTATGCCACCGCAGCGTGATTGCTGCCACCAGGGGGTGGCACCCCCCACTTCCCATACAAAATGCGCTCCAAGATATGGAATATTGCCTTAAGCACCACATCGTGCGCAAGAGCCTTGATGGATATTTCTTCCTCACAACTAAGTTTCAACAGTCATTTCCATTATATGTTAATGATGACCAACTGCCAATTGCCACCGTTCCACCTCTTGCCACTCTTCCACCACCTACCGCTACTGTTTCTAGCATCGAGCTGAGTTTCATGCCCACTGCACTGACTTTGAAGACTTCTAAGCTCAAGTTCAAGTGCATTGGGGCCTTGCCCCGCCTTTGGGCCCTTTTCCTCCATATCCACCCCGATTCCAAGTGGTTGAAGGAAAGTTTGCTTCGACCCTATGGTGGGCGCTTAATGTACTTGCCAAATTCCTACAAGCTTAATGTGCTCCTTCTAGAACCTCTCTCGTCGTGCTCCTCTTCCTCCAAGGATGATCTCCTTCACCAAAGAACTCTCCACTTCACTAGGATGTTCCTCGCTCCGAGATGGTGGAGGTACCTGCAATGGCACTTTGATGCTCAAGTAGGGCTAGTTGTGGGCAACATAGGATTTGTGCGTAGACTATTTGAGAAATTCAGCCTAACGTTTGGATTCATCATTGATTTTGGAATGATGTGTTACATGTTTGCACTGGGGATAGAGATGGATCCTTGTGTACTCCTTGCACGACCAACTAGGCATACAAAAGTTGCTGTTGCAGGAGTTATATGCACGTTCATCATAGCTGGCATTGCAACCCCAATTCTTCGGGTCTTCCCAAGTGAACATAAGCTAGTAGATTTCACCCTCGCCCTCTCCACACTGCTCTCTAGCACAGACTCACCTGTCCTGACCCGTTTGATAACTCAGCTCCAAATAGGCAAGTCTGATATTGGAAAGCTTGTCATTGGAGCAGGGGTGCACTCAGATTTTTTGTGCTATTTGATCCTTTCCATTGGCTACATAGTTATGCCATTGCCACAATTTTGTCATCATTTGAAAGGAAAGATTGACCCTAAGAAGACCATTAAAATGGGGTGTGTAGTGCTGGTGCAGGTGGTGTTCACTGCCATGGTCTCACCAATCCTTATGAACTGGTTAGCAATGAAAACCCAGAAGTTTGAGGCACGTCATTTTTCAACCTGGGCAAGATTACTTTTGCTCTTGGGAGTGGCAACAGCTGGAAAAGTTGCTGGAACAGTTATCTCTGGGGCCATGCTGGGCTTTCGCTGGCCTGAATCGGTTGCAATAGGAATGCTCCTCGTCACTAAGGGCCATTTGCATATCTACTTAGCTATCAAAGTGATAGGTTGTGGTGCTACAAGTATTTCCACAGGCATTGTGATGGTAATTGCAGCCTTTTTAACAGCTTTGCCTGTCCCAGCAATTGCGGCAAATATCATAAAACGTGCAAAGAAAAGAGCACCTACGCATCGTTTGGCTCTTCAATTGCTTGACCCTTCAAGTGAGCTGAGGATCCTCCTGTGTGTTCAAGGACCGCAGAATGTTCCTGCTTCCATCAACTTGGTTGAGATCACGAAAGGGACCGCTGATGCTGGTATTGTGGTATATGTCACTGACATGATTGAACTCACCAGTGAAATATCAGACACATTAGAGAGGGATGAAGGAGTGCACACAGCCACAGTGAAAGACAAGGAAGTCATGGACATGAGAAACCAAGTAACCAACTCATTCCAAGCCTGTGTCGTAGAGAATGATGATGGCATTACACTCAAAAGAACCATGGCACTCTCAACAATCAATAACATGCCACAAGACATTTGCATTTTAGCAGAGGACTTGATGATTGCCCTCATCATATTGCCATTCCACAGGAGCCAGCGTGAGGATGGAAAGTTGGATGGTGGTAATTCAGGGTTCAGATACATGAACCGAAAGGTACTAAGAAGTGCCCCTTGTTCTGTTGGGATACTAGTAGACAGAGGCCTTGGATCAGTTGAACATATATCAAGATGTCAAGTAGCACTAAATGTGGCAGTCATATTCATTGGTGGAAAAGATGATCGGGAAGCACTAGCCTATGCTAGCCGTGTAGCACGACATCCACGAGTTAAGCTCACAGTAATAAGATTCCTGGTAGATAGCAGTGTAGAATCCTCAAGCTTGTACAGGATCATCCTTCCAGAGCAGGAGAAAGAGACGAAGTTGGATGATGAATGCTTTACACAGTTCTATGAAAGGCATGTGATTGGAGGCCGGATTGCCTATATGGAGAAGTATCTTGCAAATGCTGCTGAGACCTTCTCCACTCTCAGATCATTTGAAGGGCAACACTCATTGGTGATTGttggaagagaaggaggaatgAACTCTATTTTGACAAGGGGCATGAATGATTGGCAACAGTGCCCAGAACTGGGACCAATAGGGGACGTTCTTTCAGGATCAGACTTCTCAATGACTGTTTCTATTTTGATCATCCAACAACATAGACTTAAAGGAGAAATAGATGGGTTGAATGAAGACTTCTCTATCATTTAA 2622 0.4542 MISLHATMWWQRSLVGDGRIGTRIEDPRVCHRSVIAATRGWHPPLPIQNALQDMEYCLKHHIVRKSLDGYFFLTTKFQQSFPLYVNDDQLPIATVPPLATLPPPTATVSSIELSFMPTALTLKTSKLKFKCIGALPRLWALFLHIHPDSKWLKESLLRPYGGRLMYLPNSYKLNVLLLEPLSSCSSSSKDDLLHQRTLHFTRMFLAPRWWRYLQWHFDAQVGLVVGNIGFVRRLFEKFSLTFGFIIDFGMMCYMFALGIEMDPCVLLARPTRHTKVAVAGVICTFIIAGIATPILRVFPSEHKLVDFTLALSTLLSSTDSPVLTRLITQLQIGKSDIGKLVIGAGVHSDFLCYLILSIGYIVMPLPQFCHHLKGKIDPKKTIKMGCVVLVQVVFTAMVSPILMNWLAMKTQKFEARHFSTWARLLLLLGVATAGKVAGTVISGAMLGFRWPESVAIGMLLVTKGHLHIYLAIKVIGCGATSISTGIVMVIAAFLTALPVPAIAANIIKRAKKRAPTHRLALQLLDPSSELRILLCVQGPQNVPASINLVEITKGTADAGIVVYVTDMIELTSEISDTLERDEGVHTATVKDKEVMDMRNQVTNSFQACVVENDDGITLKRTMALSTINNMPQDICILAEDLMIALIILPFHRSQREDGKLDGGNSGFRYMNRKVLRSAPCSVGILVDRGLGSVEHISRCQVALNVAVIFIGGKDDREALAYASRVARHPRVKLTVIRFLVDSSVESSSLYRIILPEQEKETKLDDECFTQFYERHVIGGRIAYMEKYLANAAETFSTLRSFEGQHSLVIVGREGGMNSILTRGMNDWQQCPELGPIGDVLSGSDFSMTVSILIIQQHRLKGEIDGLNEDFSII 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1651 873 Pfam Sodium/hydrogen exchanger family 221 436 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu8g1651 873 PANTHER CATION/H+ EXCHANGER 3 410 870 - -
Ssu8g1651 873 PANTHER CATION/H+ EXCHANGER 3 218 407 - -
Ssu8g1651 873 Gene3D - 220 419 IPR038770 -
Ssu8g1651 873 PANTHER CATION/H + ANTIPORTER 410 870 - -
Ssu8g1651 873 PANTHER CATION/H + ANTIPORTER 218 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1651 Ssu-Chr8 37937040 37953384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1651 390 873 Antiporter Super Family AT3G52080 47.590 1.41e-157 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1651 - - gmx:100786469 803.512