Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1650 ATGGATGAATACCACTGTCGTGCATACCCACACATGTCTGCCTCCGACTTTGTCTCAGAAATTCCATTCTGCCACGAAGATCAACACTTCAATGTAGAGGTTGAATACACCAATATGTACGTTTTGAATGCTAGGAAATTCCACACTGTTTATAACACTGCTCATCACAAGTTTCCAAATATATCAAAGGATGAAATGATGCAAGAAACAACCATCGTGTCTTGGCTTTCCCAGATGGGTGTGCCTAGGGACGCTCACAAGTTTGTGGTGGCAAATGTATTGGAATGTGCGCGTGGCATGGCTAATAATAGGACTCACTATGAGTTTCTATCTATGCGTGTGGAAGTGGTTATCACTCGGGCCAGTGAAGATGAAACaagtgatgaagaagaagaagaagatgatgatgatgatgattttgaagaagaagaagaagaattagaGGATGAAGATCATGGGTTGGTGCCCGCGGCTAAGTCACTCGTTGAGGGGTTGGAGACGGTTGAACAAGAAGGGTCTATGCGGGGAAGGTGTGCGATTTGTTTCGAAGATTTTCTTGTTGGTGTTCGTATGCCCTGTTTGCACATGTTTCATAAAAACTGCATCGGGGATTGGTTGCGGaaaacaattcaaaaatgGGCACCCCTATACACCAAAACTGGGTTGCATGATGTTGAAACTGGACAACAAGAAAACTATGAGGCAATGCAAGGAGCAGTGTCGCCTGATGAACAACATTGTTTATGGACTCAGGAGGATCATTACTACATCACTGCATGA 780 0.4038 MDEYHCRAYPHMSASDFVSEIPFCHEDQHFNVEVEYTNMYVLNARKFHTVYNTAHHKFPNISKDEMMQETTIVSWLSQMGVPRDAHKFVVANVLECARGMANNRTHYEFLSMRVEVVITRASEDETSDEEEEEDDDDDDFEEEEEELEDEDHGLVPAAKSLVEGLETVEQEGSMRGRCAICFEDFLVGVRMPCLHMFHKNCIGDWLRKTIQKWAPLYTKTGLHDVETGQQENYEAMQGAVSPDEQHCLWTQEDHYYITA 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1650 259 SUPERFAMILY RING/U-box 177 209 - -
Ssu8g1650 259 MobiDBLite consensus disorder prediction 124 151 - -
Ssu8g1650 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 220 IPR013083 -
Ssu8g1650 259 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 46 208 - -
Ssu8g1650 259 Pfam Ring finger domain 177 210 IPR001841 -
Ssu8g1650 259 Coils Coil 130 150 - -
Ssu8g1650 259 PANTHER F6A14.12 PROTEIN-RELATED 46 208 - -
Ssu8g1650 259 MobiDBLite consensus disorder prediction 120 156 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1650 136 206 C3H Transcription Factor Family AT5G01980 38.750 1.56e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1650 - - aprc:113855623 205.682