Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1628 ATGAATGATGGTAGACAAATGGAGGTGCACTATATAGACACTGGGTTTCCCTATACTGTTACTGAAAGCTTCATGGATTTCTTCGAAGGCCTCACCACGCACGTGCCCGTCAATTACGCCCACGCTGGCTCCGTGCTTGATCAgGAAAGTGTCTACTGGTCAATGAACATGAACCCATATAAGTTTGGTTTGTCTGGCCCTGGATCTTATTATGATTCTTACGAGGTAAATGATCATTTTCCAAGAATGGAGATCAATAGGGGAGAGTGGGAATACCCTTCAACAATGACTGTGGATGAACCTGCCACAACTGACTCTCCATCTGGAAGGGATGGAGTCACGAGCATGCAGACTATCCCCGAAGAATGCAGTCCAAATCATCAAGAATCCACTAGCAACCAGGTCATGTGGCAAGACAACATTGATCCAGATAATATGACATATGAGGAACTACTGGACCTGGGCGAGGCATTGGGAACTCAAAATCGAGGTCTTTCCCAAGAAATTATTGATATGCTTCCAACCTCAAAGTACAAGTTCGGGAgcttattcaaaagaaaaaaatctggGAAAAGGTGTGTGATTTGTCAGATGTCATATAGAAGAGGGGACCAACAAATAAAATTGCCATGCAGCCATGTTTACCATGGCGAATGTATTACAAAATGGCTTAACATTAACAAGGTTAGTCAATGTGTTATTCTGAATTTCATGCCTACACAATATGTTTGTCTCCTCTCATTTTTCCTCGTCTTTTTTCAGAAGTGCCCAGTTTGTAACATTGAGGTATTTGGTGAGGAATCAACTAATTAG 813 0.4108 MNDGRQMEVHYIDTGFPYTVTESFMDFFEGLTTHVPVNYAHAGSVLDQESVYWSMNMNPYKFGLSGPGSYYDSYEVNDHFPRMEINRGEWEYPSTMTVDEPATTDSPSGRDGVTSMQTIPEECSPNHQESTSNQVMWQDNIDPDNMTYEELLDLGEALGTQNRGLSQEIIDMLPTSKYKFGSLFKRKKSGKRCVICQMSYRRGDQQIKLPCSHVYHGECITKWLNINKVSQCVILNFMPTQYVCLLSFFLVFFQKCPVCNIEVFGEESTN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1628 270 Pfam Ring finger domain 192 232 IPR001841 -
Ssu8g1628 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 264 IPR013083 -
Ssu8g1628 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 269 - -
Ssu8g1628 270 ProSiteProfiles Zinc finger RING-type profile. 193 232 IPR001841 -
Ssu8g1628 270 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 269 IPR033276 GO:0004842|GO:0016567|GO:0046621
Ssu8g1628 270 SUPERFAMILY RING/U-box 192 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1628 Ssu-Chr8 36623079 36627107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1628 3 268 C3H Transcription Factor Family AT3G63530 50.370 2.71e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1628 K19045 - gmx:100792734 418.698