Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1624 ATGACAGATCCTCAATCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTCTATTCTCACCACTCTTCTTTTACTTCTCAATCAAACCTAATCTCTTCCTACCCTCTTGCATACTCAAACAACAGCACCTTTTCCATTCAATCCGAAGCCTCTTCCTCTTGTGcaccttctccttcttctcctcTCAAAGAAGCCCTCCCTCTCATAAACAACATAAGCCTCATAAAACAGAAGGAAAATGAACCCTCAAACAGATGTGGCCATGGCGCAGTTGAAGAGGAAGGACAAAAGAGAAGGGACAAAGATGAGAGCCTTTTGGCTAGCACTGAAGAGGTTGATGATGAAACTGTGACAGTAGCACTGCGCATAGGGCTTCCTAGCATGGATGCTTCTGATCTTCTGGGATCAAGGAAGATCTCAACTTGTACACAAATGGGTGAAAAGGGTGAAGTGAGTGTGATTTCTGGACACCCTTTGGATAGATTTAACAAGGTTCAGTATTGGATTCCCAACCATTCTCAGATTCTCATTGGTCCTACTCAATTTTTATGTTCTGTGTGCTCTAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCATCAGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACACTTCAAACACATTATAAGAGAAAACATGGTGTTAAACCCTACATGTGCAGAAAATGTGACAAAGCATTTGCAGTGAAAGGTGATTGGCGTACACATGAGAAAAACTGTGGCAAAATTTGGTACTGTTTATGTGGGTCTGATTTTAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCACGGCCATGGAGCTATTGACATTGATTGCATGCAAGAAGATGAAGCGGCCTCCGAAATTGAACATGATGGGGATAGTTCAATGTGA 1032 0.4118 MTDPQSNLYAGTFNFMPLYSHHSSFTSQSNLISSYPLAYSNNSTFSIQSEASSSCAPSPSSPLKEALPLINNISLIKQKENEPSNRCGHGAVEEEGQKRRDKDESLLASTEEVDDETVTVALRIGLPSMDASDLLGSRKISTCTQMGEKGEVSVISGHPLDRFNKVQYWIPNHSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGVKPYMCRKCDKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAIDIDCMQEDEAASEIEHDGDSSM 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1624 343 MobiDBLite consensus disorder prediction 78 110 - -
Ssu8g1624 343 Gene3D Classic Zinc Finger 246 325 - -
Ssu8g1624 343 PANTHER ZINC FINGER PROTEIN WIP2 1 338 IPR043584 GO:0003700|GO:0010468
Ssu8g1624 343 SMART c2h2final6 267 287 IPR013087 -
Ssu8g1624 343 SMART c2h2final6 183 205 IPR013087 -
Ssu8g1624 343 SMART c2h2final6 293 316 IPR013087 -
Ssu8g1624 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Ssu8g1624 343 SUPERFAMILY beta-beta-alpha zinc fingers 172 205 IPR036236 -
Ssu8g1624 343 SUPERFAMILY beta-beta-alpha zinc fingers 251 287 IPR036236 -
Ssu8g1624 343 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Ssu8g1624 343 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 338 - -
Ssu8g1624 343 MobiDBLite consensus disorder prediction 82 107 - -
Ssu8g1624 343 Gene3D Classic Zinc Finger 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1624 Ssu-Chr8 36451487 36453650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1624 1 336 C2H2 Transcription Factor Family AT3G57670 50.267 1.24e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g1624 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1624 - - gmx:100818131 564.303