Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1620 ATGTCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCATGTTTGAAAGGGGAGCAATGTGATTTTTCACATGAGAAAAAGGATGATATTTGCAGCTATTATCAAAAAGGATTCTGTGCTTATGGTAGTAGATGCAGATATAAGCATGTCAAAGCTTGTCAGGGGTCATCTTCAGCAAATGGACGCCATTCTACTGTTTCAGATTCTGTTGTGAATCATACTACTAAAGGAACGTCAAGTTGGGTTCCAAAGGCTGTGAAGTCATCTCCATCTGACAAGCGTGCAAGGAATTCACAACATAAGAATCTGGCCTCTCTTGGAAATGATGTTGGTGAATCCAGTACTAGTAGTGCTATACCATCTGAACTTTTGTTTTGTACATTTGCTGCTGCCAACTGCCCCCTTGGAGATAAATGTTCTCGCATTCATGGAAATCAGTGTTTATACTGTAGAAAATTTTGCTTACATCCTACTGAtcgaaaggaaaaagaaaatcatttgaGGACTtgtgagaaaaaggaaaaatacctTCAGGCTTTGAAAGATAGTAGAGAAGTAGAATGCAATGTTTGTTTGGAGCGTGTTCTTTCCAAACCTAAACCATCCGATTGTAAGTTTGGGCTGCTTCCTGAATGTGACCATGCTTTCTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGACATCAATAATACTGCTAATACAGTGAGAACCTGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAGGAAATTATTGACAACTACAAGGCAAACTGCAAactAATTGATTGCAAGCATTTTAACTTCGGAAATGGGAATTGTCCATTCGGGGCTAGTTGTTTCTACAAGCATACAGTGAAGCCTGGCTCATACACATGGATACATCACAGGCCACCACCTCAACGTAGACAAAACAATTTTGATATGTATGACATGTTGGACATGCTCAGCGATGTTGATTTATCAAGTGCAGAATATTTTTCCATCATGAGGGACTCAGAGTTTTTTGATGATATGGATCCATTCGAGATGATGGATATATCTGATAGGCTCGCTGGTGAATCAGGTCCTTGTTTGGGTCCTTTTGATTCTGATGAGGAGGACATGGATATTTTTCAGATGGCTGCATTGTCAGAAGCACTGGTTTCTGGTGTGGATGATTTTGGTCCTGAAGATTTTGATGATGAAGAATTCAATCCTATGGAGGCTGCCTTGTTATCAATAATGATGCATTCTAATAtggaagaagatgatgatgaagaagagtaCAGTGATGAAGGCTACTAG 1347 0.3794 MSNRVCKFYARGACLKGEQCDFSHEKKDDICSYYQKGFCAYGSRCRYKHVKACQGSSSANGRHSTVSDSVVNHTTKGTSSWVPKAVKSSPSDKRARNSQHKNLASLGNDVGESSTSSAIPSELLFCTFAAANCPLGDKCSRIHGNQCLYCRKFCLHPTDRKEKENHLRTCEKKEKYLQALKDSREVECNVCLERVLSKPKPSDCKFGLLPECDHAFCLSCIRNWRNSAPTSGMDINNTANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHHRPPPQRRQNNFDMYDMLDMLSDVDLSSAEYFSIMRDSEFFDDMDPFEMMDISDRLAGESGPCLGPFDSDEEDMDIFQMAALSEALVSGVDDFGPEDFDDEEFNPMEAALLSIMMHSNMEEDDDEEEYSDEGY 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1620 448 Pfam Zinc finger, C3HC4 type (RING finger) 188 248 IPR018957 GO:0046872
Ssu8g1620 448 CDD RING-HC_MKRN 188 249 - -
Ssu8g1620 448 Pfam RNA-binding, Nab2-type zinc finger 126 144 - -
Ssu8g1620 448 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Ssu8g1620 448 Pfam RNA-binding, Nab2-type zinc finger 283 304 - -
Ssu8g1620 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 254 IPR013083 -
Ssu8g1620 448 SUPERFAMILY CCCH zinc finger 24 49 IPR036855 GO:0046872
Ssu8g1620 448 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Ssu8g1620 448 SMART c3hfinal6 27 51 IPR000571 GO:0046872
Ssu8g1620 448 SMART c3hfinal6 278 306 IPR000571 GO:0046872
Ssu8g1620 448 SMART c3hfinal6 121 145 IPR000571 GO:0046872
Ssu8g1620 448 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Ssu8g1620 448 ProSiteProfiles Zinc finger C3H1-type profile. 278 307 IPR000571 GO:0046872
Ssu8g1620 448 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 448 - -
Ssu8g1620 448 MobiDBLite consensus disorder prediction 75 111 - -
Ssu8g1620 448 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Ssu8g1620 448 SMART ring_2 188 248 IPR001841 -
Ssu8g1620 448 ProSiteProfiles Zinc finger RING-type profile. 188 249 IPR001841 -
Ssu8g1620 448 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Ssu8g1620 448 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 27 50 IPR000571 GO:0046872
Ssu8g1620 448 Gene3D - 28 148 - -
Ssu8g1620 448 PANTHER MAKORIN-RELATED 1 448 IPR045072 -
Ssu8g1620 448 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Ssu8g1620 448 Gene3D - 1 27 - -
Ssu8g1620 448 SUPERFAMILY RING/U-box 178 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1620 Ssu-Chr8 36272856 36278645 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu8g1620 zf-C3HC4 4.7e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1620 K15687 - gmx:100788886 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1620 8 36272856 36278645 Ssu8g1620 8 36272856 36278645 ECH