Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1619 atgttCTCTCCCATATTTTTCACCATCCAAATTCAATTTCCAATCTTTCCTCATATTTCTATTCCTATTATATCTTATTGCCACCATCCAACAATAAAATCACCGTTTCTCAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCCTGTCTGAAGGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGTTTCTCGAGTGCAATCTTCCACTCCATCTTCTTCAGTAATTGAACACCAGACCCTGGTTTCAGATACTGTTGCTTTCGGAAATACTAGAGCTACATCAAATGGTGTTGCTCCAGCTGCAGAGTTTTCTCTTTCCGGGAGTCCTTACCTTCTCCCTAGTGAACCGGCTTGGAATCAAGAATTTGAGTATCAAGAACTTTTAGGGGAAGACAATGTTGGTCAATCCATAATCACTTCACCTTCTGAGCTTTCAATCTGTTCATTTGCTGCTGCTGGCAACTGTCCACGAGGGGAAAAGTGTCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAGCAGTGCTTGCATCCTTTCCGACCTGACGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCAAAAGCATCTTGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCGTGTGCTGTCAAAGCCTACAGCAGCTGAACGTAAGTTTGGGCTGCTATCTGAATGTGATCATCCATTTTGCATATCATGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAATGGCACATTGAGGGCTTGTCCTATCTGTCGTAAGCTATCGTACTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAGGAAATCATTGACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGATGGGAATTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGATGGCAATTCTGTAATTGCTAAAGACATCAGGTTGTCAGATTTCCTTTCTAACATGCATTTAAGATGA 1176 0.4167 MFSPIFFTIQIQFPIFPHISIPIISYCHHPTIKSPFLRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKVSRVQSSTPSSSVIEHQTLVSDTVAFGNTRATSNGVAPAAEFSLSGSPYLLPSEPAWNQEFEYQELLGEDNVGQSIITSPSELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKQCLHPFRPDEREEHMKSCENKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNGTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDNYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGNSVIAKDIRLSDFLSNMHLR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1619 391 Gene3D - 67 196 - -
Ssu8g1619 391 ProSiteProfiles Zinc finger C3H1-type profile. 325 354 IPR000571 GO:0046872
Ssu8g1619 391 ProSitePatterns Zinc finger RING-type signature. 262 271 IPR017907 -
Ssu8g1619 391 Pfam CCCH-type zinc finger 40 60 IPR041367 -
Ssu8g1619 391 Pfam CCCH-type zinc finger 68 87 IPR041367 -
Ssu8g1619 391 ProSiteProfiles Zinc finger C3H1-type profile. 35 62 IPR000571 GO:0046872
Ssu8g1619 391 Pfam RNA-binding, Nab2-type zinc finger 330 352 - -
Ssu8g1619 391 Pfam RNA-binding, Nab2-type zinc finger 174 193 - -
Ssu8g1619 391 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
Ssu8g1619 391 CDD RING-HC_MKRN 238 296 - -
Ssu8g1619 391 Gene3D - 31 66 - -
Ssu8g1619 391 ProSiteProfiles Zinc finger RING-type profile. 238 296 IPR001841 -
Ssu8g1619 391 SUPERFAMILY CCCH zinc finger 66 87 IPR036855 GO:0046872
Ssu8g1619 391 SUPERFAMILY CCCH zinc finger 37 60 IPR036855 GO:0046872
Ssu8g1619 391 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE 38 391 - -
Ssu8g1619 391 Coils Coil 213 237 - -
Ssu8g1619 391 ProSiteProfiles Zinc finger C3H1-type profile. 169 196 IPR000571 GO:0046872
Ssu8g1619 391 Pfam Zinc finger, C3HC4 type (RING finger) 238 295 IPR018957 GO:0046872
Ssu8g1619 391 PANTHER MAKORIN-RELATED 38 391 IPR045072 -
Ssu8g1619 391 SMART c3hfinal6 170 195 IPR000571 GO:0046872
Ssu8g1619 391 SMART c3hfinal6 64 89 IPR000571 GO:0046872
Ssu8g1619 391 SMART c3hfinal6 35 61 IPR000571 GO:0046872
Ssu8g1619 391 SMART c3hfinal6 325 353 IPR000571 GO:0046872
Ssu8g1619 391 SUPERFAMILY RING/U-box 227 302 - -
Ssu8g1619 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 301 IPR013083 -
Ssu8g1619 391 SMART ring_2 238 295 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1619 Ssu-Chr8 36254920 36258028 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu8g1619 zf-C3HC4 4.4e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1619 K15687 - gmx:100787817 690.649