Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1607 ATGAGGCCCATATTCCATTGCCATTACCGACCTCACAGCACCTTCAAATCCCCCTTTCCTCTCTCTCACCCTTCTTCGCCCTCCCTCACAACACAATTAAAAACGCTTCCcttattctcttttctctctctgaaTCCGCAAAACCCAAACCCCTTTTCGTTCTCCATGGCTCAGAAAACCGGAAAAGAAGAAACCGACTTCAAGGTTCCCGAAACGATTACTCTTTGTGTTAACAACTGCGGCGTCACCGGGAACCCCGCCACCAACAACATGTGCCAGAAGTGTTTCACCGCCTCAACCGCCACCACCTCCGCCGCCGGAATCTCCTCGCCGGCGTCCAGATCCGGCGCGTCTGCGCGCCCCCAGAAGAGATCCTTCCCCGAAGAGCCCTCGCCGGCGGCGGATCCTCCGTCCTCCGAGCAAACGACGCCGTCCGAGGCGAAGCGCGTCGTGAACCGTTGCTCCGGCTGCCGGCGGAAGGTCGGACTCACCGGATTCCGGTGCCGGTGCGGCGAACTGTTCTGCGCCGAGCACCGGTACTCCGACCGCCACGACTGCAGTTACGACTACAAAGCCGCCGGAAGAGAAGCCATCGCGAGGGAGAATCCGGTGATCAGAGCCGCGAAGATCGTCAAAGTctga 642 0.5732 MRPIFHCHYRPHSTFKSPFPLSHPSSPSLTTQLKTLPLFSFLSLNPQNPNPFSFSMAQKTGKEETDFKVPETITLCVNNCGVTGNPATNNMCQKCFTASTATTSAAGISSPASRSGASARPQKRSFPEEPSPAADPPSSEQTTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGREAIARENPVIRAAKIVKV 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1607 213 Gene3D - 55 122 - -
Ssu8g1607 213 Pfam AN1-like Zinc finger 154 191 IPR000058 GO:0008270
Ssu8g1607 213 Gene3D - 129 209 IPR035896 -
Ssu8g1607 213 ProSiteProfiles Zinc finger AN1-type profile. 148 194 IPR000058 GO:0008270
Ssu8g1607 213 PANTHER AN1-TYPE ZINC FINGER PROTEIN 56 213 - -
Ssu8g1607 213 SUPERFAMILY AN1-like Zinc finger 138 207 IPR035896 -
Ssu8g1607 213 SMART A20_3 73 97 IPR002653 GO:0003677|GO:0008270
Ssu8g1607 213 SMART AN1_Zf_4 154 191 IPR000058 GO:0008270
Ssu8g1607 213 MobiDBLite consensus disorder prediction 106 146 - -
Ssu8g1607 213 ProSiteProfiles Zinc finger A20-type profile. 70 104 IPR002653 GO:0003677|GO:0008270
Ssu8g1607 213 Pfam A20-like zinc finger 75 96 IPR002653 GO:0003677|GO:0008270
Ssu8g1607 213 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 5 56 213 - -
Ssu8g1607 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 75 118 - -
Ssu8g1607 213 MobiDBLite consensus disorder prediction 106 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1607 Ssu-Chr8 35677119 35677760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1607 63 213 C2H2 Transcription Factor Family AT3G52800 39.286 1.35e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1607 - - var:108333085 306.219