Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1603 ATGGACAAGGGGGTGCCACCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGCAAGGGAAGAATGTCAAATTAGAAGATTCTAAACCAATTAAGGTTATTTCAGGGTCTTTGTCTCCCAATCCCTCCATTACCAAAACGTCTGTGGAGTTGAAGGTTAATGATACAAGGAAAACATCTCAGGGAGGTTCAGGTGGCAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTGCCACCCCCTGTTAAGTTGAGTGCCGATGAGGATGAAGAAGAAACAGAAGCTGGGGATGTTTCAATTGATGCACCACTGAAACGACAAAAGTTAGGCCAGGAGGAAGACATTGACCAATCATCAAGACAACTTGATGTTGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAAAATGGAAGGCaatttgaggatgttacacGTCAAAAAAATCCTGGGGATACACCTTTCAAttttttatttaatgagagaTGTGCTGAATACAAGTATTATGAATATCGActtgctcaagaagaaaaggcTCTTGCACAGTCAAGGGAATCACAGGTGCCTCGTAATGTGGGTACAAGCACTACTTCTTCCAAACAGACTAGTGGTCATCAAAGATCATCTCAGCACCATACAGCCTACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCAAGAGCTTCTGGATCTTCAATTCAAACATCATCAGTAGGAAGCAGTGAAGAACCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAGAAGGGTAAACAACCTAAGCAGTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCTAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCCAGAAGAACTGGAGAAGTTCTTGGCTAGCTGTAATGATGCTGCAGCACAGAAAGCTGCAAGGGAGGCTGCAGAGAGGGCTAGGATTCAGGCTGATAATGTAGGCCACAAGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGCGGCTCCAGGAAGGGTATTTCGGATCCTATCATGGCTGGTAATGTTAAGAAGAACAACTTGGGGGTTGGTGCTGAGGAACCTGGGGAGGTGACTGCTGAGGATGACATATACGAGCAGTACAAGAAGAGGATGATGCTTGGCTACCGTTACAGACCCAATCCTCTGAACAATCCCCGCAAGGCTTATTACTGA 1314 0.4338 MDKGVPPSLFVNDGSFMERFKQLQQEQEQGKNVKLEDSKPIKVISGSLSPNPSITKTSVELKVNDTRKTSQGGSGGKLAFSLKQKSKLVPPPVKLSADEDEEETEAGDVSIDAPLKRQKLGQEEDIDQSSRQLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFNFLFNERCAEYKYYEYRLAQEEKALAQSRESQVPRNVGTSTTSSKQTSGHQRSSQHHTAYQIPASALYESADNPRASGSSIQTSSVGSSEEPSGSSNADSLALMEFYMKKAAREEKGKQPKQSKDEMPPPASLLGKKGHHMGDFIPPEELEKFLASCNDAAAQKAAREAAERARIQADNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKNNLGVGAEEPGEVTAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1603 437 Pfam G-patch domain 355 399 IPR000467 GO:0003676
Ssu8g1603 437 MobiDBLite consensus disorder prediction 249 275 - -
Ssu8g1603 437 SUPERFAMILY Surp module (SWAP domain) 131 199 IPR035967 GO:0003723|GO:0006396
Ssu8g1603 437 MobiDBLite consensus disorder prediction 44 77 - -
Ssu8g1603 437 SMART surpneu2 146 200 IPR000061 GO:0003723|GO:0006396
Ssu8g1603 437 MobiDBLite consensus disorder prediction 202 238 - -
Ssu8g1603 437 Gene3D Surp module 96 205 IPR035967 GO:0003723|GO:0006396
Ssu8g1603 437 SMART G-patch_5 352 399 IPR000467 GO:0003676
Ssu8g1603 437 MobiDBLite consensus disorder prediction 201 275 - -
Ssu8g1603 437 MobiDBLite consensus disorder prediction 43 146 - -
Ssu8g1603 437 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 437 IPR040169 -
Ssu8g1603 437 ProSiteProfiles SURP motif repeat profile. 148 191 IPR000061 GO:0003723|GO:0006396
Ssu8g1603 437 Pfam Surp module 147 197 IPR000061 GO:0003723|GO:0006396
Ssu8g1603 437 MobiDBLite consensus disorder prediction 109 130 - -
Ssu8g1603 437 MobiDBLite consensus disorder prediction 289 318 - -
Ssu8g1603 437 ProSiteProfiles G-patch domain profile. 354 401 IPR000467 GO:0003676
Ssu8g1603 437 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 437 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1603 350 410 C2H2 Transcription Factor Family AT5G26610 45.161 3.42e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1603 K13096 - gmx:100786213 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1603 8 35459062 35463989 Ssu8g1603 8 35459062 35463989 ECH