Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1602 ATGAAAGATCAAGGTTGCAATGGACTCCCTTGTGTCATGAAGGTGATTGCAAAGATGAGTGCTATGTATAGTCCTGTTCTCAAGTACTCAGATGTGGAGCTTCAACTAAGGAAAAACCAAGAAATGGATTCAAGTATTGGACATCCACAACAGCACTGTCACCAGCCCAATTCTGGACTACTGAGGTACTGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTTGTTGACAACACCATTCATGGCTGTGTCAATGAGGAATCATTCACAAGTGAGAATCATCAGCATTATCTTCCATCCACAAGTTCAGAAATGGAGACAATGTTGTCCAAATTGGTATCATCCAACAATGGATGGAGTAATTCAGAACCTTTGCAAGAATTTGGAGGCAAACCTGTGAAGCAGGAAATAGGGGAATCAGTTCCGCAAGGACCACCACAACAGAATGGTTATTCTTATGGTGGCTCTCAGTTAATTTACCAATCTCAGCAAATTCAAGGCATGCGAAATGGTTCTTCGAGTGCTGCTGGCAATGCTTTTGATGGCTCTTTTGGTTTGGTGAACTCCATGGCTTCAGAGAACTCCGTTCAATCTAAAATGGATGTCAGGAATCGCTCCAATCTCTTTAGGCAAAAGAGCTCTCCTGCTGGATTTTTCTCCATTGAAAATGatGTTGCAGCCTTGAGAGAAATAGGAAGCTTTAAATCCAATGATGTCTCAAATGGACAGGCTACTGCATCAACTAGTGGGTTGCATGGCACTCTTACTTTCTCATCTAGGCCATCTTCATGGTTGAAACGGATGCCACAAATCgctgaaaatgaaaatgaaagccTAGAAGAAAATTGTGACCAAAGTAGAAACCTAGCAAATGACAATGGTAGCTCAAAATGTTACATACCTAGCTTCACCAGTGAATTCTGGGACAGTTCTGCATTCAATGCCCCCAAAACAGAAAGTGAAGATGAAATCATGTTTTCCAGTTCAAATGGTTTGGAATCTCAGGAAGCAGATTTCAGCTATCAAGATTCTGGTTTGACTCACCATTTGAGTCCGCCTTGCTCTTCTACTAAGATGGCATCCATAGAAAAGTTTCTTCAAATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCGGAGAGGGTAAGAAGAACAAGGATTAGTGAAAGAATCAAGAAATTGGAAGGCCTTTTCCCAAAATCAGAAAAGCAAACAAGCACAGCAGAAATGTTAGATTCGGCAGTTGAGTACATTAAGGACCTGCAGCAACAAGTTAAGACACTCACAGATTGTAAGGCAAAGTGCAAATGTACAAGTAATGAGAAGCACTACACTAGAACTTGTGCCTGA 1380 0.4116 MKDQGCNGLPCVMKVIAKMSAMYSPVLKYSDVELQLRKNQEMDSSIGHPQQHCHQPNSGLLRYCSAPSSLLASLVDNTIHGCVNEESFTSENHQHYLPSTSSEMETMLSKLVSSNNGWSNSEPLQEFGGKPVKQEIGESVPQGPPQQNGYSYGGSQLIYQSQQIQGMRNGSSSAAGNAFDGSFGLVNSMASENSVQSKMDVRNRSNLFRQKSSPAGFFSIENDVAALREIGSFKSNDVSNGQATASTSGLHGTLTFSSRPSSWLKRMPQIAENENESLEENCDQSRNLANDNGSSKCYIPSFTSEFWDSSAFNAPKTESEDEIMFSSSNGLESQEADFSYQDSGLTHHLSPPCSSTKMASIEKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLEGLFPKSEKQTSTAEMLDSAVEYIKDLQQQVKTLTDCKAKCKCTSNEKHYTRTCA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1602 459 SMART finulus 387 437 IPR011598 GO:0046983
Ssu8g1602 459 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 451 - -
Ssu8g1602 459 Pfam Helix-loop-helix DNA-binding domain 387 432 IPR011598 GO:0046983
Ssu8g1602 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 381 431 IPR011598 GO:0046983
Ssu8g1602 459 Gene3D - 383 454 IPR036638 GO:0046983
Ssu8g1602 459 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 49 451 - -
Ssu8g1602 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 384 447 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1602 Ssu-Chr8 35393108 35396022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1602 52 437 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.223 2.05e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g1602 HLH 9.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1602 - - gmx:100812802 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1602 8 35393108 35396022 Ssu8g1602 8 35393108 35396022 ECH