Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1596 ATGGCGCCGAAGAAGCCGAGAAGCGCGAGGGTGACGAGGAACCCTGATTTGATAAGGGGAATTGGGAAGTACTCGAGGTCGCAGATGTACCACAAGAGGGGCATCTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTCCCTCGTCACGATCCCAAGCCCAAGCCCGAAGCCCCGGCCCAGAAGCCGCCCAAGTTTTACCCCGCCGACGATGTGAGGAAGCCCCTCGTCAACAGGCACAAACCCAAACCCGCGAAGCTCAGGGCTAGCATTACTCCAGGCACAGTGCTGATCCTACTTGCTGGGAGATTCAAGGGAAAAAGGGTTGTTTTCCTGAAGCAACTTCCATCTGGGCTGCTTCTTGTGACAGGTCCCTTTAAGATCAATGGGGTTCCACTCAGAAGGGTGAACCAATCATATGTCATTGGTACATCCACAAAAGTAGATATCTCTGGTGTCAATGTTGACAAATTTGATGACAAGTACTTTGCCAAGAAagccaagaaaaagaaaaccaaggGAGAAGGCGAGTTCTTTGAGGCAGAGAAGGAGGAGAAAAATGTGCTTccccaagaaaagaaagatgacCAAAAAACTGTGGACACTGCTTTGTTAAAAGCCATTGAGAGTGTTCCGGACCTGAAGTCTTACTTGGGTGCTAGGTTTTCTTTGAAAGCAGGAATGAAGCCTCACGAGCTAGTCTTCTAG 705 0.4738 MAPKKPRSARVTRNPDLIRGIGKYSRSQMYHKRGIWAIKAKNGGVFPRHDPKPKPEAPAQKPPKFYPADDVRKPLVNRHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKKAKKKKTKGEGEFFEAEKEEKNVLPQEKKDDQKTVDTALLKAIESVPDLKSYLGARFSLKAGMKPHELVF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1596 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Ssu8g1596 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Ssu8g1596 234 Pfam Ribosomal protein L6, N-terminal domain 3 62 IPR005568 GO:0003735|GO:0005840|GO:0006412
Ssu8g1596 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 - -
Ssu8g1596 234 MobiDBLite consensus disorder prediction 42 82 - -
Ssu8g1596 234 SUPERFAMILY Translation proteins SH3-like domain 88 174 IPR008991 -
Ssu8g1596 234 Gene3D - 88 172 IPR014722 -
Ssu8g1596 234 CDD KOW_RPL6 82 234 IPR041997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1596 Ssu-Chr8 35217166 35219528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1596 3 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 82.759 4.82e-126 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1596 K02934 - gmx:100784101 387.882