Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1591 ATGGCTTCTCTTCACTCTTCTCTGCTCTTGCCACCGAATCTCTTTTCCCTCTCAACCCCATCAAGTTCCTCCACTCACATGCTCTTGAACCCGAGACCCTCCACGACCCACTTGCGACCCCTTCTCACCGTACGACGTCGTTTTGGGAGACCCTTCGCCGTGGCTGAACAAGCTACGGTGACCGAGGCCGCGAGGAGGCTCTACGTTGGCAACATTCCCCGCACTGTCACCAACGATGAGCTCGCCAAGATTGTTCAAGAGCATGGTGCCGTTGAGAAAGCTGAGGTTATGTATGACAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACGATGAAAACTGTTGAGGATGCAAATGCTGTGATTGAGAAACTTAATGGCACTGAAATTGGAGGGCGTGAGATCAAAGTAAACATAACTGAAAAACCTTTATCAACACTAGATTTGCCTGTATTCCAAGCTGAGGAATCCGAATTTATTGACAGTCCCCACAAGGTGTATGTGGGAAATCTGGCCAAGACAGTAACAACCGACActcttaaaaagtttttttctgAGAAGGGAAAAGTTCTTAGTGCCAAGGTTTCACGGGTCCCTGGTACCTCAAAATCGAGTGGGTATGGTTTTGTTACTTTTTCATCAGAAGAGGATGTAGAAGCTGCAATCTCATCTTTCAACAATTCTTTGTTAGAAGGACAAAAAATTCGTGTGAACAAGGCATAG 726 0.4559 MASLHSSLLLPPNLFSLSTPSSSSTHMLLNPRPSTTHLRPLLTVRRRFGRPFAVAEQATVTEAARRLYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLSTLDLPVFQAEESEFIDSPHKVYVGNLAKTVTTDTLKKFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQKIRVNKA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1591 241 SUPERFAMILY RNA-binding domain, RBD 159 241 IPR035979 GO:0003676
Ssu8g1591 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 241 IPR000504 GO:0003723
Ssu8g1591 241 SUPERFAMILY RNA-binding domain, RBD 58 143 IPR035979 GO:0003676
Ssu8g1591 241 CDD RRM_HP0827_like 66 143 - -
Ssu8g1591 241 Gene3D - 153 241 IPR012677 -
Ssu8g1591 241 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 1 241 - -
Ssu8g1591 241 SMART rrm1_1 166 239 IPR000504 GO:0003723
Ssu8g1591 241 SMART rrm1_1 66 139 IPR000504 GO:0003723
Ssu8g1591 241 Gene3D - 53 147 IPR012677 -
Ssu8g1591 241 PANTHER OS02G0815200 PROTEIN 1 241 - -
Ssu8g1591 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 137 IPR000504 GO:0003723
Ssu8g1591 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 237 IPR000504 GO:0003723
Ssu8g1591 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1591 Ssu-Chr8 34981663 34986059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1591 67 241 Eukaryotic Initiation Factors Gene Family AT2G23350 32.584 1.35e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1591 K13126 - gmx:100783567 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1591 8 34981663 34986059 Ssu8g1591 8 34981663 34986059 ECH