LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu8g1578	ATGTGGAGATTTAAGCCATTCATGCACAAAGAGCAGACCGGTCTTGAAGGCCGTACTGTAGATGTTGGAAATCTTAGAATAAATGTCCTTAAGGCGATTGCTGAAGGAGGGTTCTCTTGTGTCTACCTAGCTCGTGATGCTGTACATATGTCAAGGCAATATGCTTTGAAGCACATGATATGCAATGATGAAGAGTCACTTGGATTGGTAAAGAAGGAGATATCTGTGATGAAGATGCTGGTAGGACATCCTAATGTTGTCACACTTCATGCACATACTATCTTTGATATGGGTAGGACAAAAGAGGCATTCCTTGTGATGGAATTTTGCGAGAGGTCTCTGGTTAATGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAAACAGGTTCTTTCGATCTTCAGGGATGTGTGTAATGCAGTTTTTGCAATGCACTGCCAGTCTCCACCAATTGCTCACCGAGACTTGAAAGCAGAGAATCTTTTATTAGGTTCAGATGGCTTATGGAAGTTATGTGATTTTGGAAGCACTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAGTACACAACCCCTGCCTACAGGTCGCCCGAGATGTGGGATCTGTTTCTGAGAGAAGTCATTAATGAGAAGGTGGACATATGGGCTCTTGGGTGTCTACTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATCTACCAAAATACAATTCATCTGTCACGGACTTGATAAGAGACATGCTCCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGTCTGGTTTCGTGTTAATGAgcaactacctaataatttacAGAAGTCATTACCTGACAGACCACCTGAATCACCCTCATCCCACAGTCACGAAGGTTTGTCAATGTCCTCAAACAGATCACCTCCAATGCCTCGTAGGAACCCACCTCCTCCACCTTCATCTGGAGAACCCAAAACAGCACCACAGCCATCCCTTGCTTCTAGGGGAGGGGGAAGTGGGGGGCAGCTTGGTGCTTTCTGGTCCACTATGCATGCAAAGGATTCACTTGTCGCTGAGGATAAGAGCAAACCAATTTTTGATGAAGAACCATCTAGCCACCATATGCCATTGAAACATGATAGAATTCCTCCTGAAAACGATCAATTCCCCAAAAATGTTAGTACTAACAAAGTGGTTAACACAGAAACTCATACTGTGAAAAGCAGTACACAAGGAAAATTACACAAGCCTGATACTGTATCCACCAAGGATTTTGAACTAAATTTCTTTCAGGATAAAGATCGAGTGGGTGAGAAGCAAATGCCTAGTATGGAGAATACAACTAACTTTCAAAACCAGGCTTTTAACACTTTTGTTACTGAATTTGATACCACTAAGGTCAACCCTGGACTTAATAACAAACCTGAAAGGGAACAAGCATTAGAGGCTGAGGTGGAGAAACTCAAAGAGCAGCTGAAGGAAGCTAACTTGGAGAAAGCTGAAATAACATCGAAGTATGAAAAGCTTTCTGCTATCTGCCGATCACAAAGGCAAGAATTGCAGGATCTTAAGCAAGCACTTGCAGCTAGGACTCCTTCACCAACTAGAGAGGGTTTGAAAACATCTCCTGCAGTTACATCACCTGCATCTGCGAGAGAGAAGTTTGCTGGGGCTGCTTTGGAACAGCAGGATAGAACTGAATGGAAAACACCTAGTTCAGAACCAAAGTCATGGCAAGCTTTTCCAGAGGAACCCCAACCACAAAAGTCCCTCTCAGCAGAAAATACCTCCAAATCTGTCAGGACAAAAAATGGTCACCAGAACAAGCAACCTGTTCCACTAGCTACTACTAATTTTGATTCTTGGGGTTTTGGGACAGATAGCTTCAGTGCTGTACCTGCTGGCAGCTCACAGATACAAAGACCTAGTGAAGGGACTAAGGCTAAGACTTTTGGTGAGGCAAAGATCTTTGAGAGCAAGTCAACCTCTCAACCAGCTGGATGGGCTGGTTTTTAA	2079	0.4324	MWRFKPFMHKEQTGLEGRTVDVGNLRINVLKAIAEGGFSCVYLARDAVHMSRQYALKHMICNDEESLGLVKKEISVMKMLVGHPNVVTLHAHTIFDMGRTKEAFLVMEFCERSLVNVLESRGAGYFDEKQVLSIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRSPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKYNSSVTDLIRDMLQARPDDRPDITQVWFRVNEQLPNNLQKSLPDRPPESPSSHSHEGLSMSSNRSPPMPRRNPPPPPSSGEPKTAPQPSLASRGGGSGGQLGAFWSTMHAKDSLVAEDKSKPIFDEEPSSHHMPLKHDRIPPENDQFPKNVSTNKVVNTETHTVKSSTQGKLHKPDTVSTKDFELNFFQDKDRVGEKQMPSMENTTNFQNQAFNTFVTEFDTTKVNPGLNNKPEREQALEAEVEKLKEQLKEANLEKAEITSKYEKLSAICRSQRQELQDLKQALAARTPSPTREGLKTSPAVTSPASAREKFAGAALEQQDRTEWKTPSSEPKSWQAFPEEPQPQKSLSAENTSKSVRTKNGHQNKQPVPLATTNFDSWGFGTDSFSAVPAGSSQIQRPSEGTKAKTFGEAKIFESKSTSQPAGWAGF	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu8g1578	692	CDD	STKc_GAK_like	26	298	-	-
	Ssu8g1578	692	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	680	-	-
	Ssu8g1578	692	Coils	Coil	492	547	-	-
	Ssu8g1578	692	MobiDBLite	consensus disorder prediction	386	407	-	-
	Ssu8g1578	692	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Ssu8g1578	692	PANTHER	NUMB-ASSOCIATED KINASE, ISOFORM A	1	680	-	-
	Ssu8g1578	692	MobiDBLite	consensus disorder prediction	677	692	-	-
	Ssu8g1578	692	MobiDBLite	consensus disorder prediction	548	692	-	-
	Ssu8g1578	692	Gene3D	Transferase(Phosphotransferase) domain 1	10	307	-	-
	Ssu8g1578	692	SUPERFAMILY	Protein kinase-like (PK-like)	27	343	IPR011009	-
	Ssu8g1578	692	MobiDBLite	consensus disorder prediction	593	666	-	-
	Ssu8g1578	692	MobiDBLite	consensus disorder prediction	299	366	-	-
	Ssu8g1578	692	SMART	serkin_6	27	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu8g1578	692	ProSiteProfiles	Protein kinase domain profile.	27	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu8g1578	692	MobiDBLite	consensus disorder prediction	330	346	-	-
	Ssu8g1578	692	MobiDBLite	consensus disorder prediction	386	413	-	-
	Ssu8g1578	692	MobiDBLite	consensus disorder prediction	299	329	-	-
	Ssu8g1578	692	Pfam	Protein kinase domain	29	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu8g1578	Ssu-Chr8	33950188	33953502	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu8g1578	31	292	Miscellaneous Gene Families	AT2G34180	28.623	1.92e-19	90.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Ssu8g1578		Pkinase	4.8e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu8g1578	K08853		-	gmx:100808507	1117.06