Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1572 ATGGCTTTGGAAGTTGTGGGGGGAGCCTTCTTGGAGGCTGTTTTCGGTGCCTTGTTTAAAGCAATAGCTTCTCCTGTGGTGGTTGACTTGTTTAAGAAGAGCAAAAGCAGTGACATGTTGCTGAGGAGGTTGAAGATCTCCTTGTTGTCCGTTAATGTTGTGCTCAATGATGCAGAGGAAAAGCAAATGAGAAATGGAGCTGTGAAGGAGTGGCTTGAGGAACTGAAAGATGTTGTCTTTGATGCTGAAGATCTATTGGATGAAATCTATACTGATGCCAATATAGGAGCAACAACTGAGGTAATCACCCTCAACTCCACTCCTGTGAATTTGTGTGGTAAAGAACTTGAACATAAAGTAGAAGATATTCTTGAAAGATtagattttatcataaaacagAAAGATATGCTTGAGTTGCAAATGGTTAAGGAAGTCAAAATCCCACCGAAGATACCATCTTCATCTGTAGTGGGAGCGAGTGATGTGTACGGTAGGGATGATGATAGAGAGGCCTTAATTAACTTGCTATTTTCGAATGATGCTGGTGATGACTGCAATGTAAGTGTGATTCCTGTGGTGGGCATGGGTGGAATTGGAAAAACAACCTTAGCTCAACTTGTATACAATGATGATAGAGTGCAAAAGGAATTTGATCTCAAAGCTTGGGTCCATGTATCTGACCAGTTTGATATCCTCAAGATTACAAAAACCCTGGTAGAAGAGATCACTTCGTGCGGTTGCAGTATTGAAGACTTGAATTTTCTCCAACAAGATTTAAAGAAAAGGctgttaaagaaaaagtttttattcattttagatGATGTTTGGAATCAAAACTATGTTAAATGGGAAACTTTGAAGAATCCATTTCTGTATGGGGCTCCAGGAAGTAAGATTATTGTAACCACACGAATTGCTCATGTTGCATCAATCATGCAGACTATTGAACCTTATTATCTTTCAGAGCTGTGTGAAGATGACAGTTGGATGTTGTTTGCAAAACATGTATTTGGATATGCAAATTCAATTGTCCATCCAAATCTAGGAAAAATTGGTaaagaaatagttaaaaaatgcAAAGGATTGCCTCTGGCTTTGAAGACACTTGCAGGACTTTTGCGATCTAAAGATGATACACGGGAGTGGTATAAAGTACTTAACAGCAAGATCTGGGATTTGCAAGAAGATGACAGTAATATTCTCCCAGCTTTGAGATTAAGTTATCATTATCTTCCATCACATTTGAAGAGGTGTTTTGCATACTGCTCAATTTTTCCAAAGGACTATGAATTTGAGAAGGAGAAGTTGATTCTGCTGTGGATGGCAGAAGGTTTGCTACAACAAATGAGAAGACACAAGAGAATTGAAGAAGCTGGAGATGAGTACTTTTATGAATTGATGTCTAGATCATTTTTCCAGCAATCAAAACGTGATAAGTCATGTTTCGTAATGCATCATCTTGTAAATGATTTAGCTCAATTTGTATCTGGAAAATTTTCTGCCAAAGTGGAACGTAATTATGATGAAGTAGAAGAAAGTACTCGCTACTTGCTGCATTTGATTGCACATAAATTCCCTGCCGTACATTGGAGGGCTATTAGCAAAGCAATTCGCCTACGGACCTTTGTGGAACTAAGGTTGGTTGATAAATCTGTAACCTTTATTGACGAGATGCCATATGACTTGTTGGTGAAGCTAAGGTATTTAAGGGTGTTATCTTTAGCGGGCATCTATCTTCAGGGTTTGCCTGATTCAATTACTGAACTAAAACTTCTCCGCTATCTAGATGTTTCTGGGGCTAAGATGTACAAGCTGAGGAAATGCATTAGCAGCTTATGCAATTTGCAAACCCTGAAGTTAGTAGGATGTTCTGAGCTACTAGAACTTCCTACAGATATGCACAATCTTGTTCACCTACGCCATTTAGATATTTCTGGCACTTCTTTGAAATGGATGCCATTACATATGAGTGCACTGAGAAACCTACAAAAGTTGAGTGACTTTTTTGTAGGAAAAGAATGTGGATCTTCAATTGGTGAACTGGGAGAATTATCTGATTTACATGGATCGTTGTTCATTCATCACATTGGACATGTTAGCTATAGGGATTCTGGAAAGGCCCAGTTGAAGGAAAAGGAATTTCTTGAGAAGTTAATTTTGGATTGGGGTGAGAATGATACTGATTGTTCACAGCACGAGAAAAATATACTGGACAGCTTACGACCCCATACAAATTTGAAGGAATTTGCTATATATAACTATCCAGGGACAGAATTTCCCAATTGGGTAGGTGACTCTTCATTCTGCAACTTGTTGTTTATGGAGCTTAAGGGTAGCAAATATTGCTATAAATTACCTCCACTTGGACAACTTCAATCCTTGAAAGAGCTACGGATTGCTAAATTTGATGGATTGGTGAGTGTGGGGTCTGAGTTCTATGGGAATGGAAATGGTTCTTCAGTTGTCAGTGAGAGCTTTCCTTCCTTAGAAACTCTGAGGATTGATGATATGTCAGCATGGGAGGTGTGGCTTCCTAATGAGGCCTGCAGAGCTTTTGCACTTCTTCAAGAACTTCACATAAATAGCTGTCCAAAACTGACAGGGGATTTACCTATTAACCTTCCATCTTTGACATTACTTGTCATCAGAGACTGCAAGCAGCTCATTTCTTCACTTCCAACAGCTTCAGCTATGCGGGTATTGAACGTTGAGAACTGTGGGAATTTAAAATTCCCAGCATGTGTACATCAGTGCCACTCACTCACATCTTTATACTTACACAATAGCTGTGACTCGCTTAAGGTTTTACCATTGGATATCTTTCCCAACCGCAAGTCCCTGGATATTTCAGGTTGTAAAAATCTAAGAGAGTTTACAAAGTCAGGGAAAGTGCACATCCCCCTCCGTTCCTTGTCCATAAGTAACTGTCCAAACTTCACATCCTTTCCCACAAAATTGTTTGCTGCCCCAAAGCTTACATTGTTGAGTATTGACTGCTGTGAGGAGCTGAAGTCCCTACCACAAAAAATGAATCTGAACATGCCAAGCTTGAGGGAACTCCAGCTATGGAGATGTCCAAAAATGCAGCCAATTGAGAATTGGCCATGTGATTTGAGATCAGTCAGCATCTGGAACTGCGACAAACTCATTGCTCACGAATTGGAATGGAATCAATCCAATCCGATCCGACTTACACACTTGATAAAGTCTGGGGCATTCACTGTCAGATCTGCTGATTGCTCAACGGTTTCAAGTTCAATTCAAGCCTCTCCAAGACGAGCATTATCAAGCTCCTCTCAGAGGAAAACCTATGCAGGAAGAGTGTCCAGACAGAAGTCATCAGGACAGGCCTATCACATGGATCACATCATTAACAATGGATTTCTTACAGATTACTCAGGTTGA 3405 0.3935 MALEVVGGAFLEAVFGALFKAIASPVVVDLFKKSKSSDMLLRRLKISLLSVNVVLNDAEEKQMRNGAVKEWLEELKDVVFDAEDLLDEIYTDANIGATTEVITLNSTPVNLCGKELEHKVEDILERLDFIIKQKDMLELQMVKEVKIPPKIPSSSVVGASDVYGRDDDREALINLLFSNDAGDDCNVSVIPVVGMGGIGKTTLAQLVYNDDRVQKEFDLKAWVHVSDQFDILKITKTLVEEITSCGCSIEDLNFLQQDLKKRLLKKKFLFILDDVWNQNYVKWETLKNPFLYGAPGSKIIVTTRIAHVASIMQTIEPYYLSELCEDDSWMLFAKHVFGYANSIVHPNLGKIGKEIVKKCKGLPLALKTLAGLLRSKDDTREWYKVLNSKIWDLQEDDSNILPALRLSYHYLPSHLKRCFAYCSIFPKDYEFEKEKLILLWMAEGLLQQMRRHKRIEEAGDEYFYELMSRSFFQQSKRDKSCFVMHHLVNDLAQFVSGKFSAKVERNYDEVEESTRYLLHLIAHKFPAVHWRAISKAIRLRTFVELRLVDKSVTFIDEMPYDLLVKLRYLRVLSLAGIYLQGLPDSITELKLLRYLDVSGAKMYKLRKCISSLCNLQTLKLVGCSELLELPTDMHNLVHLRHLDISGTSLKWMPLHMSALRNLQKLSDFFVGKECGSSIGELGELSDLHGSLFIHHIGHVSYRDSGKAQLKEKEFLEKLILDWGENDTDCSQHEKNILDSLRPHTNLKEFAIYNYPGTEFPNWVGDSSFCNLLFMELKGSKYCYKLPPLGQLQSLKELRIAKFDGLVSVGSEFYGNGNGSSVVSESFPSLETLRIDDMSAWEVWLPNEACRAFALLQELHINSCPKLTGDLPINLPSLTLLVIRDCKQLISSLPTASAMRVLNVENCGNLKFPACVHQCHSLTSLYLHNSCDSLKVLPLDIFPNRKSLDISGCKNLREFTKSGKVHIPLRSLSISNCPNFTSFPTKLFAAPKLTLLSIDCCEELKSLPQKMNLNMPSLRELQLWRCPKMQPIENWPCDLRSVSIWNCDKLIAHELEWNQSNPIRLTHLIKSGAFTVRSADCSTVSSSIQASPRRALSSSSQRKTYAGRVSRQKSSGQAYHMDHIINNGFLTDYSG 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1572 1134 Pfam Rx N-terminal domain 10 93 IPR041118 -
Ssu8g1572 1134 MobiDBLite consensus disorder prediction 1091 1113 - -
Ssu8g1572 1134 Gene3D - 142 316 IPR027417 -
Ssu8g1572 1134 SUPERFAMILY L domain-like 539 954 - -
Ssu8g1572 1134 Gene3D - 20 107 - -
Ssu8g1572 1134 PRINTS Disease resistance protein signature 262 276 - -
Ssu8g1572 1134 PRINTS Disease resistance protein signature 359 373 - -
Ssu8g1572 1134 PRINTS Disease resistance protein signature 189 204 - -
Ssu8g1572 1134 PRINTS Disease resistance protein signature 610 626 - -
Ssu8g1572 1134 Gene3D Ribonuclease Inhibitor 532 895 IPR032675 -
Ssu8g1572 1134 SUPERFAMILY L domain-like 898 1067 - -
Ssu8g1572 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 422 IPR027417 -
Ssu8g1572 1134 CDD RX-CC_like 41 89 IPR038005 -
Ssu8g1572 1134 Gene3D - 322 406 IPR042197 -
Ssu8g1572 1134 PANTHER DISEASE RESISTANCE PROTEIN RP 31 871 IPR044974 GO:0006952
Ssu8g1572 1134 Gene3D - 407 494 IPR036388 -
Ssu8g1572 1134 PANTHER OS05G0414200 PROTEIN 31 871 - -
Ssu8g1572 1134 Pfam NB-ARC domain 169 388 IPR002182 GO:0043531
Ssu8g1572 1134 Gene3D Ribonuclease Inhibitor 896 1097 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1572 Ssu-Chr8 33642366 33645884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1572 186 653 WRKY Transcription Factor Family AT5G45050 23.092 7.56e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1572 - - ccaj:109812375 1261.51