Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1566 ATGGAAAACCACCAAAACCACAAGCCCGAGCCAGAACCTAACATAGAGAAGAACCACCAACGCCAACACCAACACCATAACCAAGCGTGGGGCACGTGGGAGGAGCTGTTGCTAGCGTGCGCCGTGAACCGCCATGGCTTCAAGGACTGGGACACCGTCGCCATGGAGGTTCAGTCGCGCACCACGCGCCTCCTCGCCACCGCGCGCCACTGCGAGCAGAAATTTCACGATCTCAACCGCCGATTCGCCGACCAATGCAACGACGACGTTCCGCCGCCGTGCCAGAACGGCGCCGCCGCCGGCGACAACTCCGATCACGTCCCCTGGCTCGACGAATTGCGCAAACTCCGCGTCGCCGAGCTCCACCGCGAGGTCCAACGCCGCGACGTTTCCATTCTgtcGTTGCAGTTGGAGGTTAAGAGGCTAGAGGAGGAGAAAGCGAAAGAGAATGACGGAAAAGACGACGAGAAACCAGATCTGGCGGTTTCCGGCGAGGCGCGGCCGGAAAACGACAAAACCGGCGGAGAAGTTGAGGAGGCTGGACCGGCGAATTCCGAACCGGAGAGAACCGCGAACGCGGACAAGATGTTACCAACAACGGGCGACGAATCGGACCGGGAGAACCAGTCGGTTAACGAGTCCAACTCGACCGGTTCGCGGTTCGAGAAAACCGGAGAGGGCGACACGCAGCTAGGAACCGGAACCGGACCGGTCCCGGTTCAGACCGGTTCGCAAGAACCGGATCCTGTTGCGAGGAAGGGAAAGCCGGTTGGGGAGGAATCGAATAACGGAAGCTACGATGCTTTGGCGAAGGTTCCAACGTGCGAGTCGGTGCCTCCGAGTGAGGAGCGGAAGGTGGAGGAGGATGATGAGTCGTCCGAGTTGCACGACTCGGTGGCTCACTCCGGCGAGGGAGGGACAAGGGAGAGCAGCGAGGTGCAGAGCTCCGCGAGCTTGACGCGGAAGCGGAAGACGCGGCCGAGGAAGGAGGTTTCCGGCGGCGACGGTCGGGCGCCGGCGGAGAACGACGAGGTGGCGATGGTGAAATCAGAACCGTTGCTTGGGGTTTTGGAGTTGATCAAGGGGCACGAGCACAACTCATTGTTCGACCGCCGTCTTGAAAGCCAGGAGTCGGACAGATACAAAGACATAGTGAAACAGCCCCTGGACTTGGAAACCATACAATTGAGACTCCAAAAGGGTCACTATTCCTCATGCACTAGTGCATTCTTCCGcgacctcctcctcctcttcacCAACGCCACCGTGTTCTTCCCCCATGATTCCACCGAATCACAGGCAGCGCAGCTGCTGCGCTGCCTTGTCACCGCTGAGATGAAGAACCACGGCCAAGCACAATCCGACCCTATCCCCCGGAAGAACGATTCACTTTCCCCTAAAGCACCATTAGCCAAACCAGATTCTCTCTTTTCCAAGAACAAAGCCTCTGGTCCTATATTGGTCTGCCGCAAACGCAGTTCAATCTCGGCCAAACCTTCCTCAGCCACCTTCAGCCAAAAGGGTGACCAACCCATCTTCAATGATAAGAAGGAAAGGTCATCTTCTGATGCAAAACCACCATTGAAACCCTCTACTTCTGATACAGACGAAGAGGAGCTTCCCAAGGCTAAGGAAAAGCCTGTCACTGGAGCGAGAAGCCTGAGAAGGAGCAACAAGAACCTCAATAATAAGAAACTCTCCTCTAACTCCAATCCTAAGGCAGGGTCCTCGGGGAACAAGCCATCGGAGACCCTTAAACCAGACAAGAGTAAAGCAGAGGGAGGGTCAGACAAGAAGAGGAATGCTGCTGCCGATTTCTTGAAACGGATTAAGCGAAACACTTCAGTGGAAGCATCAAAGgttggtagtggtggcggtggaggaggaggaagtAGTAGTAGCAGCAAGGGTGGTGGAGGTGGTATTGGTGTCAAAGAGCAGAAGAAAATGGTGACTAATGGAAAGGGGGATAAAGGGAAAGAAAGGGGATCCAGGCATAACGGTGGAGGGTCAGCGTCTAGTGATAAAAGGAATAAGAATATTGAGAACAACTCTCAGTCTAAGAGGGGTGTTGGTAGACCTCCAAAGAAGGCAGCAGAGACAAATGCAGGTAGTGCAAAGCGTGGGAGGGAAAGTAGTGCTAGTGCTGGCAAGGATAAGCGACCCAAGAAACGTTCCAAGAAATGA 2187 0.5386 MENHQNHKPEPEPNIEKNHQRQHQHHNQAWGTWEELLLACAVNRHGFKDWDTVAMEVQSRTTRLLATARHCEQKFHDLNRRFADQCNDDVPPPCQNGAAAGDNSDHVPWLDELRKLRVAELHREVQRRDVSILSLQLEVKRLEEEKAKENDGKDDEKPDLAVSGEARPENDKTGGEVEEAGPANSEPERTANADKMLPTTGDESDRENQSVNESNSTGSRFEKTGEGDTQLGTGTGPVPVQTGSQEPDPVARKGKPVGEESNNGSYDALAKVPTCESVPPSEERKVEEDDESSELHDSVAHSGEGGTRESSEVQSSASLTRKRKTRPRKEVSGGDGRAPAENDEVAMVKSEPLLGVLELIKGHEHNSLFDRRLESQESDRYKDIVKQPLDLETIQLRLQKGHYSSCTSAFFRDLLLLFTNATVFFPHDSTESQAAQLLRCLVTAEMKNHGQAQSDPIPRKNDSLSPKAPLAKPDSLFSKNKASGPILVCRKRSSISAKPSSATFSQKGDQPIFNDKKERSSSDAKPPLKPSTSDTDEEELPKAKEKPVTGARSLRRSNKNLNNKKLSSNSNPKAGSSGNKPSETLKPDKSKAEGGSDKKRNAAADFLKRIKRNTSVEASKVGSGGGGGGGSSSSSKGGGGGIGVKEQKKMVTNGKGDKGKERGSRHNGGGSASSDKRNKNIENNSQSKRGVGRPPKKAAETNAGSAKRGRESSASAGKDKRPKKRSKK 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1566 728 SMART sant 26 81 IPR001005 -
Ssu8g1566 728 CDD Bromodomain 353 439 - -
Ssu8g1566 728 MobiDBLite consensus disorder prediction 584 615 - -
Ssu8g1566 728 MobiDBLite consensus disorder prediction 1 23 - -
Ssu8g1566 728 SUPERFAMILY Homeodomain-like 25 62 IPR009057 -
Ssu8g1566 728 CDD SANT 29 61 IPR001005 -
Ssu8g1566 728 Coils Coil 132 152 - -
Ssu8g1566 728 MobiDBLite consensus disorder prediction 1 27 - -
Ssu8g1566 728 MobiDBLite consensus disorder prediction 145 343 - -
Ssu8g1566 728 SUPERFAMILY Bromodomain 351 451 IPR036427 GO:0005515
Ssu8g1566 728 MobiDBLite consensus disorder prediction 145 176 - -
Ssu8g1566 728 MobiDBLite consensus disorder prediction 511 552 - -
Ssu8g1566 728 PANTHER BNAC04G22430D PROTEIN 14 728 - -
Ssu8g1566 728 ProSiteProfiles Bromodomain profile. 361 432 IPR001487 GO:0005515
Ssu8g1566 728 MobiDBLite consensus disorder prediction 650 665 - -
Ssu8g1566 728 MobiDBLite consensus disorder prediction 667 690 - -
Ssu8g1566 728 Pfam Myb-like DNA-binding domain 28 62 IPR001005 -
Ssu8g1566 728 MobiDBLite consensus disorder prediction 449 478 - -
Ssu8g1566 728 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 14 728 - -
Ssu8g1566 728 MobiDBLite consensus disorder prediction 278 303 - -
Ssu8g1566 728 MobiDBLite consensus disorder prediction 497 728 - -
Ssu8g1566 728 Pfam Bromodomain 356 436 IPR001487 GO:0005515
Ssu8g1566 728 MobiDBLite consensus disorder prediction 210 242 - -
Ssu8g1566 728 MobiDBLite consensus disorder prediction 553 583 - -
Ssu8g1566 728 MobiDBLite consensus disorder prediction 304 320 - -
Ssu8g1566 728 SMART bromo_6 128 451 IPR001487 GO:0005515
Ssu8g1566 728 MobiDBLite consensus disorder prediction 616 638 - -
Ssu8g1566 728 Gene3D - 341 456 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1566 Ssu-Chr8 33324116 33328412 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu8g1566 Bromodomain 5.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1566 - - gmx:100811021 1133.63