Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1559 ATGGAGCTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTGCTTGGCTTCATGGAAAAGCCTCGTGAAGCCTCCAACCAACTGGGGTTAGGCTTCAGCACCACGTTATCAATTGGTCCAATCCTCACTAGACAAAAAGATCAACAAGAccaagaagatgaagatgaagaagaagaaacaaagccaaagaacaacaacaacaacaccaacaatCACAGAACAGAAGATCCCAGTGACCTTTCTTCCAAACCCAACAACAACCCAGCTCTGCATCAACTTGATCTTCTCCCTCAACTCTCTTTCCCATGGCACCCCCCTTCTGAAAACGGGAGTTTTTCATCTGAGTTGGGGGGTTCTCCGCGGGGCTTGGACGTGAACGCGCAGCCGCCGCCGGCGGAGGAAGCGGCGGCGCTGTCGTCATCTCCGAACAGCGCAGCCTCATCGTTTCAAATGGATCTATGCATATACAACAGAGGAGGGAGCTTCTATAAGAGGGACTCTGAGGGTGAGGCATATGATCAAAGGGCCTCTTCAAGAGCCAGTGATGAAGACGACAATAACGGTGGCGGCGGCAAGACCAGAAAGAAACTCAGACTCTCAAAGGAACAATCTGCGTTCCTTGAAGAGAACTTCAAAGAACACAACACTCTTAACCCTGTGAAAACAAAGCTTGCTCTTGCTAAACAACTCAATCTTCGACCTCGCCAAGTAGAAGTCTGGTTCCAAAACCGTCGAGCAAGGACTAAGTTGAAGCAAACGGAAGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGACACTAACGGAAGAGAATAGGAGGCTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCGTTCTACATGCAATTACCAGCCACTACTTTGACCATGTGCCCTTCTTGTGAGCGCGTGGCCACAAATTCCACCTCTACTTCCTCCTCCCTCAGTGCTCCTAGTGCCACCATCAATGCTAATACAGGAGCCATGGCCAGTAGTGTCAAAACGAGTAACAATAATGACTCACCCTCCAAAGCCATTGGATTCCCCTTTGGAAAACCCAGGTTTTCTTCCATTTATTCACACTAG 1098 0.4608 MELGLSLGDSSRPLLGFMEKPREASNQLGLGFSTTLSIGPILTRQKDQQDQEDEDEEEETKPKNNNNNTNNHRTEDPSDLSSKPNNNPALHQLDLLPQLSFPWHPPSENGSFSSELGGSPRGLDVNAQPPPAEEAAALSSSPNSAASSFQMDLCIYNRGGSFYKRDSEGEAYDQRASSRASDEDDNNGGGGKTRKKLRLSKEQSAFLEENFKEHNTLNPVKTKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTSSSLSAPSATINANTGAMASSVKTSNNNDSPSKAIGFPFGKPRFSSIYSH 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1559 365 MobiDBLite consensus disorder prediction 27 45 - -
Ssu8g1559 365 SMART halz 251 294 IPR003106 GO:0006355|GO:0043565
Ssu8g1559 365 CDD bZIP 244 283 - -
Ssu8g1559 365 Pfam Homeobox associated leucine zipper 251 285 IPR003106 GO:0006355|GO:0043565
Ssu8g1559 365 Gene3D - 198 249 - -
Ssu8g1559 365 ProSiteProfiles 'Homeobox' domain profile. 190 251 IPR001356 GO:0003677
Ssu8g1559 365 Coils Coil 264 287 - -
Ssu8g1559 365 MobiDBLite consensus disorder prediction 1 144 - -
Ssu8g1559 365 MobiDBLite consensus disorder prediction 64 93 - -
Ssu8g1559 365 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 336 - -
Ssu8g1559 365 MobiDBLite consensus disorder prediction 165 197 - -
Ssu8g1559 365 CDD homeodomain 194 252 IPR001356 GO:0003677
Ssu8g1559 365 PANTHER - 1 336 - -
Ssu8g1559 365 Pfam Homeodomain 194 249 IPR001356 GO:0003677
Ssu8g1559 365 SUPERFAMILY Homeodomain-like 180 252 IPR009057 -
Ssu8g1559 365 ProSitePatterns 'Homeobox' domain signature. 226 249 IPR017970 GO:0000981|GO:0006355
Ssu8g1559 365 SMART HOX_1 192 255 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1559 Ssu-Chr8 32926523 32928509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1559 176 308 Homeobox Transcription Factor Family AT4G37790 74.436 1.17e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu8g1559 Homeodomain 7.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1559 K09338 - gmx:100805312 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1559 8 32926523 32928509 Ssu8g1559 8 32926523 32928509 ECH