Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu8g1558 | ATGGAGCTTGATTTCAATCAGGAGCATTTGGGCCGGATAGAAGAGCGTATTAGATGCCTAGAAGCAGTGGTTTTCAGAGCTAGGCAGCGTCAGAGGCGGCGATTGAGTCAAGTTCCAATTCAGATAACTAATTCTGCAGGAGAATTGGTAACAACAGGTAATGTTCAAGATGTAGGCAGGGTGCATCATGAAGAGGTTGGTATTGATGTTGAAGGAGAGATGGTGGGAGGTGGGATAATGGGTAAAAGGAAGGCTACCTATTTGGTTGCTAAAGCACTGGGGGTGGAAACATATACCAATGAGGGTGAGGGTTGTGCTGGAAAATTGTTTGATTGTAACATATGCTTGGACATGGCAAGAGATCCAGTTTTGACTTGCTGTGGTCACTTGTTTTGCTGGCCATGCTTTTATAAGTTGTCATGTGCTTACTCAAATGCGAAGGAATGTCCGGTTTGTAAAGGAGAGGTCACTGAAGAAGGCATTATCCCTATTTATGGCAATGCAAGGGTTGATAGCATCAGCCACTTTGACCGGAATGAAACTGGTTTCAGAGTTCCTGTTCGACCCCGTGCACGTAGAATGGAGAGTATTAGGCAGCAGTTCAGAAGCTGA | 612 | 0.451 | MELDFNQEHLGRIEERIRCLEAVVFRARQRQRRRLSQVPIQITNSAGELVTTGNVQDVGRVHHEEVGIDVEGEMVGGGIMGKRKATYLVAKALGVETYTNEGEGCAGKLFDCNICLDMARDPVLTCCGHLFCWPCFYKLSCAYSNAKECPVCKGEVTEEGIIPIYGNARVDSISHFDRNETGFRVPVRPRARRMESIRQQFRS | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu8g1558 | 203 | CDD | RING-HC_AtRMA_like | 110 | 154 | - | - | |
| Ssu8g1558 | 203 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 9 | 201 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
| Ssu8g1558 | 203 | PANTHER | ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN | 9 | 201 | - | - | |
| Ssu8g1558 | 203 | ProSiteProfiles | Zinc finger RING-type profile. | 112 | 153 | IPR001841 | - | |
| Ssu8g1558 | 203 | SMART | ring_2 | 112 | 152 | IPR001841 | - | |
| Ssu8g1558 | 203 | Pfam | Zinc finger, C3HC4 type (RING finger) | 111 | 157 | - | - | |
| Ssu8g1558 | 203 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 188 | IPR013083 | - | |
| Ssu8g1558 | 203 | SUPERFAMILY | RING/U-box | 108 | 165 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu8g1558 | Ssu-Chr8 | 32820191 | 32820802 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu8g1558 | 101 | 202 | C3H Transcription Factor Family | AT3G58030 | 50.962 | 3.92e-32 | 118 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu8g1558 | K10666 | - | gmx:100778919 | 258.07 |