Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1546 atgGCGACGGCGACGGCGACGGCGGCGGAGTCCGAACCGAAAACGTACTGGTGCCACGAATGCGACATGAGCGTGTCCCTCGCTCTCCCTCCCTCCCCTCTCCTGTGCCCCCACTGCCACACCCACTTCCTCGAGCTCATGGACTCCCCCTTCTCCCAAAACGACGCCGCCTCCGCCGAGTCCCCCCTCTTCGACGTCGTTTTCCAGGACGCCCTCTTGCTCCTCTCCCCCGCCCCCAGGCCCCTCCCCTCCAAGCCCCGCCCCACCCTTCCCTCGGTCCCCGTGACCCCCTCTCTCCTCTCCGGCCTCGACCCGAACGGCGTCGTTCTCTGCGCCGTGTGCAAGGACCAGATTGCCCTCGGCGCCGAGGCCAAACAGCTCCCCTGCAAGCACCTTTACCACGCGGACTGCATCACGCCGTGGCTCGAGCTCCACGCGTCGTGCCCCCTCTGCAGGTTCCGcctggaggaggaggaggaagagggtGACGGCGTGATGACGGAGATCAGCAGCGAGCTGATTGCGCGGCTGACGGAGTTGACGGAGGAGGATTTCTACGGGTTGAGGACCACTCTCGGTCACATTGCTTCCCGGCACGCGCTCATCGAGGAGAACGAGAATCGCCCGCAAATTAGTGAGCCTCAAGGTGGCGAATCGGCTTGCTGA 666 0.6306 MATATATAAESEPKTYWCHECDMSVSLALPPSPLLCPHCHTHFLELMDSPFSQNDAASAESPLFDVVFQDALLLLSPAPRPLPSKPRPTLPSVPVTPSLLSGLDPNGVVLCAVCKDQIALGAEAKQLPCKHLYHADCITPWLELHASCPLCRFRLEEEEEEGDGVMTEISSELIARLTELTEEDFYGLRTTLGHIASRHALIEENENRPQISEPQGGESAC 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1546 221 Pfam Ring finger domain 111 152 IPR001841 -
Ssu8g1546 221 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 77 181 - -
Ssu8g1546 221 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 7 55 - -
Ssu8g1546 221 SUPERFAMILY RING/U-box 110 157 - -
Ssu8g1546 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 77 181 - -
Ssu8g1546 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 55 - -
Ssu8g1546 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 168 IPR013083 -
Ssu8g1546 221 SMART ring_2 111 151 IPR001841 -
Ssu8g1546 221 Pfam zinc-ribbon 15 47 IPR039525 GO:0061630
Ssu8g1546 221 ProSiteProfiles Zinc finger RING-type profile. 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1546 Ssu-Chr8 32297287 32297952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1546 9 188 C3H Transcription Factor Family AT3G60080 33.600 1.67e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1546 K11982 - gmx:100782164 305.449