Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1545 atggaGATATTATCACAAATGTGGTCTCTGTTAGGGTTACTCACCGTGCTCCAGAACGTTCTCCCGTCGCAGCTTCTCTCATTGCTTCACTCCCTATACGAGTCGTTGCAAGATCTGCTCTCTCCGTACTCCTACTTCGAGATTCCGGAGTTCAACGGCTACTGCGGCGTGGACCTCAACGACCTCTACCGCCACGCGCACCTCTACCTGAACGCCGCGCACCACTCCCCGGCCGCCGCGTGCCGCCGGCTCACGCTCTCCCGGTCGCCGTCGTCGAACCGCATCTCCTTCGCCGTCGCGCCGAACCACACCGTCCACGACGCCTTCCGCGGCCACCGCGTCGCGTGGACGCACCACGTCGAAACCGCGCAGGACTCGCTCGAGGAGAAGCGCAGCCTCACGCTCCGCCTCCCCAAGCGCCACCGCCACGCGCTCCTCTCCCCCTACCTCGCGCACGTGACGTCACGCGCCGAAGAGTTCGAGCGCGTCTCGCGCGAGCGAAGACTCTTCACCAACAACACAGCCGGGTCGGGGTCGTTCGAATCGGGTTGGGTCTCCGTCCCGTTCCGTCACCCCTCCAATTTCGAAACCCTCGCGCTCGAACCCGAACTGAAGAAGAATATCAAAAACGATTTAACGGCGTTTGCGGAGGGTAAGGAGTTTTATAACCGAGTGGGCCGGGCCTGGAAACGCGGGTACTTACTCCACGGCCCACCCGGGTCGGGTAAGTCCAGTTTAATCGCCGCTATGGCGAACTTTCTCTGCTACGACGTTTACGACCTGGAATTAACCAAAGTCTCTGATAACTCCGAGTTACGGTCGTTACTCATCCAAACGACGAACCGTTCGATTATTGTCATTGAGGACATTGACTGCTCCGTGGACTTAACGGCAGACAGGACGGCGAAGAAAACGCAAGCGAAGAAGGGGAAGAAGTCTCAAGCGGCGTCGTTTTCGCGCTGCGAGGAGAGTGGGCGCGTCACGCTCTCGGGGCTCCTGAATTTCACGGACGGGTTGTGGTCTTGCTGCGGTGAAGAGCGGATTGTGGTGTTTACGACGAACCATAGGGACAGCGTGGACCCTGCGCTCGTGCGGTGCGGGCGCATGGACGTCCACGTCAGCCTCGGCACGTGCGGGGCTCACGCGTTCCGCGAGCTGGCGAGGAACTACCTCGGGGTGGAGTCGCACGTGCTGTTCGAGGCGGTGGAGGGGTGCATTCGGTCGGGTGGGTCCCTCACGCCCGCGCACGTGGGAGAGATTTTGCTGCGGAATAGAGGTGACGCTGACGTGGCGATGAGGGAGGTGCTGGCCGCCATGCAGGGGAGGATGCTGGCCGTCGCCGCCGCCGCCGACCAGACGGATAACGAGGAGGCGGTGCCGGCGCCGGCAGCAGTGAGGTCGCCGGAGAGCGTGCTGCTGATGGGGTCGCCGGACAATTGGGATTGTTTGAGCGGGAAGAAGAGGAAGGAACAGCATGGGGGTAATAATAACTGGGACAAGAAAGTTAAGTTTTTCGTGAGGTTAAGGTCGTTGACCAGATCTGACCCTGGTAGATga 1557 0.6057 MEILSQMWSLLGLLTVLQNVLPSQLLSLLHSLYESLQDLLSPYSYFEIPEFNGYCGVDLNDLYRHAHLYLNAAHHSPAAACRRLTLSRSPSSNRISFAVAPNHTVHDAFRGHRVAWTHHVETAQDSLEEKRSLTLRLPKRHRHALLSPYLAHVTSRAEEFERVSRERRLFTNNTAGSGSFESGWVSVPFRHPSNFETLALEPELKKNIKNDLTAFAEGKEFYNRVGRAWKRGYLLHGPPGSGKSSLIAAMANFLCYDVYDLELTKVSDNSELRSLLIQTTNRSIIVIEDIDCSVDLTADRTAKKTQAKKGKKSQAASFSRCEESGRVTLSGLLNFTDGLWSCCGEERIVVFTTNHRDSVDPALVRCGRMDVHVSLGTCGAHAFRELARNYLGVESHVLFEAVEGCIRSGGSLTPAHVGEILLRNRGDADVAMREVLAAMQGRMLAVAAAADQTDNEEAVPAPAAVRSPESVLLMGSPDNWDCLSGKKRKEQHGGNNNWDKKVKFFVRLRSLTRSDPGR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1545 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 405 IPR027417 -
Ssu8g1545 518 Gene3D - 375 446 - -
Ssu8g1545 518 Pfam Domain associated at C-terminal with AAA 21 119 IPR025753 -
Ssu8g1545 518 ProSitePatterns AAA-protein family signature. 347 365 IPR003960 GO:0005524|GO:0016887
Ssu8g1545 518 SMART AAA_5 229 377 IPR003593 -
Ssu8g1545 518 Gene3D - 185 374 IPR027417 -
Ssu8g1545 518 CDD AAA 219 291 - -
Ssu8g1545 518 Pfam ATPase family associated with various cellular activities (AAA) 234 375 IPR003959 GO:0005524|GO:0016887
Ssu8g1545 518 PANTHER BCS1 AAA-TYPE ATPASE 2 515 - -
Ssu8g1545 518 PANTHER OS09G0445700 PROTEIN 2 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1545 Ssu-Chr8 32260655 32262211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1545 194 457 Calmodulin-binding Proteins AT3G56690 26.277 1.95e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1545 K08900 - gmx:100820437 905.59