Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1540 ATGGGAGCGAAAATGGTGAGGGAGTGGTTGCTTTTGAGGGTTTGGGAGGCCAGTTCTAGTTTGGAGTGGCTATCGATGATTGCAAGGGACATTGCTGGTGAACGCGATAGAGCTGACGTCGCCGATGGTTGGAGTAAGGGAAAGGGCTATGGAGGGAAAGAGTACTTGTTTGGTGCTTATTGCAGCGAAGGCAAGAACAACAAGCCAAGAGAAATTGGAATGGAAGCCAAAGGTGGAGGAGAAGTGAGAAGGCTTCACATCATTTACTTCCTTAGTCACATAGGTGGTCGTGCAGATCACCCTCATCTAATTCGTGTTCTTCATCTTGCTCGAAATGGGGTTTATCTAAGAGatGTTAAGAGATGGCTTGGGGAATTGAGAGGAAAAGACTTGCCTGAAGCTTTTGCTTGGTCCTACAAGAGGAGGTACAAGTCTGGCTATGTGTGGCAAGACTTGTTGGATGACGACCTCATAACCCCCATCTCTGACAATGAATACGTCCTCAAAGGATCACAAATCCACCCTACCCCATTTGCAACAACTCCTTCACTTGATGAAAAGCAAACTACCGTTTGTGACATCCATGCTGAGAAGAAATGTCCTCAAGTACAACTTGTAGAGGACAAACAACAGCACCAGCAGCAGCCATCTCTAGCGGAAGAAGAGCCTCAAATTCAACCAGACCCGGATTCAAAAACGGATACTCCAACGAAAGGGTCATCGGAAATCAGTCAGGACTCATTGGTCTTCAGCTCAGATAGGTCATCTGTGACGGATGATGACTCTTCTAAGGTTGAAGAAGAGAAGCATTTAGAGCCAACAGGCAAAGAGGGTTTCAATGAAATGAACCAAGAGAAGTTAGAGACTTGCTCATTGCCTTCCTTGTATCACAATCTGTTGAGCAAGAAGGGTAGCCACAAAGATGACCAGAATAAAACTAACTCACCTGATTCATCCTTATCCactatatcatcatcatcatctcaaTCCTCCTTTACTAAGATCAGAAGCAATTCTACTAGAGTTTCTAATCTGTTCCGCAATTGGATTACTTGTGGCACTGTGGAAACAAATGATGCAGCCCTGGTCCTGATGAACCcagctcaaaaaaatttctccaaGGAACCTATCAACTTACCTGAAAGAAGTGCTGAGATTTGTAAGGGAGACAAATTGGGAGGATCAGCCAGGTGTTTTGGGACTTCTTGGGGTCATCATCACCAGAAACAACAATATGGAGCAAGAAAAAGCATTGATGGAGAGGAAACGAACAGGAGCAGGAAAAAGTTAGGGGAGTTGATAAATCAAACTTCTAGCAAACCATTTGGTGGACCAACTTGCTCGCAATGTGGGAAGTCGTTTAAGCCTGAGAAAATGCACACACACATGAAGTCTTGCAAAGGAATGAAGGCCTTGGGAAAGTCAACTACAACTGATGAGGAGGCACAGCTTCAGAGATCATCAACTTCATCCCATACAGATTACTTTTTGACCAACTAA 1500 0.434 MGAKMVREWLLLRVWEASSSLEWLSMIARDIAGERDRADVADGWSKGKGYGGKEYLFGAYCSEGKNNKPREIGMEAKGGGEVRRLHIIYFLSHIGGRADHPHLIRVLHLARNGVYLRDVKRWLGELRGKDLPEAFAWSYKRRYKSGYVWQDLLDDDLITPISDNEYVLKGSQIHPTPFATTPSLDEKQTTVCDIHAEKKCPQVQLVEDKQQHQQQPSLAEEEPQIQPDPDSKTDTPTKGSSEISQDSLVFSSDRSSVTDDDSSKVEEEKHLEPTGKEGFNEMNQEKLETCSLPSLYHNLLSKKGSHKDDQNKTNSPDSSLSTISSSSSQSSFTKIRSNSTRVSNLFRNWITCGTVETNDAALVLMNPAQKNFSKEPINLPERSAEICKGDKLGGSARCFGTSWGHHHQKQQYGARKSIDGEETNRSRKKLGELINQTSSKPFGGPTCSQCGKSFKPEKMHTHMKSCKGMKALGKSTTTDEEAQLQRSSTSSHTDYFLTN 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1540 499 MobiDBLite consensus disorder prediction 472 499 - -
Ssu8g1540 499 Pfam Protein SOSEKI, plant 86 370 IPR010369 -
Ssu8g1540 499 MobiDBLite consensus disorder prediction 314 334 - -
Ssu8g1540 499 MobiDBLite consensus disorder prediction 301 334 - -
Ssu8g1540 499 MobiDBLite consensus disorder prediction 229 256 - -
Ssu8g1540 499 PANTHER F3F20.2 PROTEIN 75 489 - -
Ssu8g1540 499 MobiDBLite consensus disorder prediction 206 221 - -
Ssu8g1540 499 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 75 489 IPR010369 -
Ssu8g1540 499 MobiDBLite consensus disorder prediction 476 499 - -
Ssu8g1540 499 MobiDBLite consensus disorder prediction 257 282 - -
Ssu8g1540 499 MobiDBLite consensus disorder prediction 206 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1540 Ssu-Chr8 32051900 32059561 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g1540 DUF966 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1540 - - gmx:100785001 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1540 8 32051900 32059561 Ssu8g1540 8 32051900 32059561 ECH