Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1527 ATGACTGCCTCGAGTGCACTCACTGAAAGCATTTCGTTGCAAAAAGATATCCAAGTGCTCTTATGGATCATAATCTTTTTGGTAAGGGGAATTCCTCTTGAGGGGTGGGTGTTTTTTGTGTTGCCATTGATGACATCAAAGCCTGTCAAGATGCCTGATTTACCTGAGATGAACCACAATTTGCCAGAAGAGACACATGCTAGTGCTCATAGTAGCTGTGCAAATTCAGGAAACAACTCACCAACTCATCCCACAAATGTGAACCACGTGGCAGCAAAAGAAGCCTGCACAACAACTGTCCACAACTCAGGAAGTGAAACTGGACATTTGGACCAGCAGGTTTCCAAACCTGATGCAAAGTTGGAAGGTAAATCCAGACCCCAGAAGTTAATGCCACCAAACAGGAACATATCTGACTTCAACACTCAACACCAAAGTCCAAGCACAAAGAAGCCTAATTCAAATTCTGATCATCATGCAAAGGGAATGTCTACCACCCATTCAAAGACCCCCAGTCAAAGTGGTGCTAGTTCTCGCAGTGACAGCTTAGAGAGCACAAGTGCACCTATTAGGCCACACACTGGGGGTGATGTGAGGTGGGAAGCTATCAACATGGTTTCAAAGGGTGGCCCTCTCAATCTCAGCCATTTCAGGCTTCTCAAGCGCATTGGTTATGGGGACATTGGAAGTGTGTACCTTGTGGAACTCAAAGGAACTAGGACCTACTTTGCTATGAAAGTAATGGACAAGGCAGCTCTTATAAGCAGAAATAAGCTTCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGATCACCCCTTCCTCCCCACTTTGTATTCTTACTTTGAAACTGATAAGTTTTACTGTTTGGTCATGGAGTTCTGTAGTGGAGGTGATCTTCATTCTCTTAGACAGAAGCAACCTAACAAGTGTTTCACTGAAGAAGCTGCAAGGTTTTATGCTTCAGAGGTTTTGTTAGCTCTAGAGTACCTGCACATGCTTGGTATTGTATACAGAGACCTAAAGCCAGAGAATCTTCTAGTTAGAGATGAAGGGCACATCATGCTCTCAGATTTTGACTTATCCCTTCGCTGCTCCGTCAGTCCTACACTTGTCAAGTCTTCATCTGCCCATGCAGGAAACAGTAGTAGTGGCGGTGGTAGCAACAATGATTATGGGGGCAATTTAGGGGATGAACAAGGAGCACAAAGCACTGCTCAGCCATCAAGTTTTTTCCCGCGCATTTTGCCTTCAAAGAAGAACCGCAAGGCAAAGTCAGATTTCGGCCTATTGGTCGGTGGAGCACGACTTCCTGAACTGATGGCAGAGCCCACCAATGTGCGTTCAATGTCATTTGTAGGGACACATGAGTATCTTGCTCCTGAGATTATCAAAGGAGATGGTCATGGTAGTGCAGTAGACTGGTGGACTTTTGGGATCTTCTTGTATGAGCTGTTGCATGGAACAACCCCTTTCAAGGGTGCAGGATATAAAGCCACACTTTTCAATGTTGTTGGACAACCACTTAGGTTCCCAGAAACACCCCAAGTCAGTGCTGTGGCTCGTGAACTTATTAGGGGATTGTTGGTGAAAGAGCCTCAGAAGAGAATTGCATATACAAGAGGAGCTACTGAAATAAAACAACACCCATTTTTTGAGGGAGTGAACTGGGCTCTAGTTAGAAGTGCCGCACCTCCCCACATACCAGATGCTATAGACTTCTCCAAGTATGCTAGCAAAGACACAGGACCCCCAGTGGACAAGAAGATGGCAGATATTGCTAATGATAAAAACAGCAAAAATGCTACTGATTCTTACATAGATTTTGAGTATTTTTAG 1845 0.4477 MTASSALTESISLQKDIQVLLWIIIFLVRGIPLEGWVFFVLPLMTSKPVKMPDLPEMNHNLPEETHASAHSSCANSGNNSPTHPTNVNHVAAKEACTTTVHNSGSETGHLDQQVSKPDAKLEGKSRPQKLMPPNRNISDFNTQHQSPSTKKPNSNSDHHAKGMSTTHSKTPSQSGASSRSDSLESTSAPIRPHTGGDVRWEAINMVSKGGPLNLSHFRLLKRIGYGDIGSVYLVELKGTRTYFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGDLHSLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHAGNSSSGGGSNNDYGGNLGDEQGAQSTAQPSSFFPRILPSKKNRKAKSDFGLLVGGARLPELMAEPTNVRSMSFVGTHEYLAPEIIKGDGHGSAVDWWTFGIFLYELLHGTTPFKGAGYKATLFNVVGQPLRFPETPQVSAVARELIRGLLVKEPQKRIAYTRGATEIKQHPFFEGVNWALVRSAAPPHIPDAIDFSKYASKDTGPPVDKKMADIANDKNSKNATDSYIDFEYF 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1527 614 SUPERFAMILY Protein kinase-like (PK-like) 214 574 IPR011009 -
Ssu8g1527 614 CDD STKc_phototropin_like 215 575 - -
Ssu8g1527 614 Pfam Protein kinase domain 445 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1527 614 Pfam Protein kinase domain 218 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1527 614 MobiDBLite consensus disorder prediction 64 86 - -
Ssu8g1527 614 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1527 614 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 70 614 - -
Ssu8g1527 614 SMART serkin_6 217 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1527 614 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Ssu8g1527 614 MobiDBLite consensus disorder prediction 101 195 - -
Ssu8g1527 614 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Ssu8g1527 614 Gene3D Transferase(Phosphotransferase) domain 1 301 370 - -
Ssu8g1527 614 MobiDBLite consensus disorder prediction 131 189 - -
Ssu8g1527 614 PANTHER FLIPPASE KINASE 1-RELATED 70 614 - -
Ssu8g1527 614 MobiDBLite consensus disorder prediction 377 416 - -
Ssu8g1527 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672|GO:0006468
Ssu8g1527 614 MobiDBLite consensus disorder prediction 56 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1527 Ssu-Chr8 31768334 31775425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1527 183 614 AGC Kinase Gene Family AT1G79250 74.058 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu8g1527 Pkinase 4.6e-37 CL0016