Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1526 ATGGGGTTTCAGAAGATAAGAGTTGACAACCCCATCGTCGAAATGGATGGGGATGAAATGACGCGAGTGATTTGGAAACTGATAAAAGATAAGCTTATTTTCCCTTATTTGGAGCTGGATATTAAGTATTTTGACCTTGGCCTTCCTCATCGGGATGCCACTAATGATAGAGTTACCATTGAAAGTGCTGAAGCTACACTCAAGTATAATGTAGCAATCAAATGTGCTACTATAACTCCAGATGAAGCTCGTGTCAAGGAGTTTAACTTAAAACAAATGTGGAAAAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACAGTTTTTAGAGAGCCAATTATCTGTAAAAATATTCCTCGTCTTGTTTCAGGCTGGACAAAGCCAATATGCATTGGAAGACATGCTTTTGGAGACCAATATCGAGCAACAGATACAGTTATTGAAGGCCCAGGAAAGCTAAAATTGGTGTTTGCTCCCAGTggaaatgaagaaattaaagagCTAGAGGTCTATAACTTTACTGGTGCTGGAGGCGTAGCTTTGTCCATGTATAACACTGATGAGTCCATTCGAGCTTTTGCTGAGGCTTCGATGAACATTGCTTACCAGAAAAAATGGCCTCTCTATCTTAGCACTAAAAACaccattttaaagaaatatgatGGGAGATTCAAGGACATTTTCCAGGAAGTTTTTGACACTCAATGGAGTCACAAGTTCAAAGCTGCAAGAATATGGTATGAACACCGTCTTATAGATGATATGGTTGCTTATGCTCTTAAAAGTGATGGAGGTTATGTATGGGCTTGCAAGAATTATGATGGTGATGTGCAGAGTGATTTCTTAGCTCAAGGATTTGGTTCTCTTGGCTTGATGACATCAGTACTGGTTTGCCCAGATGGTAAAACCATTGAAGCAGAGGCAGCCCATGGCACTGTTACCCGTCATTATCGGGTTCATCAGAAGGGAGGTGAAACCAGCACAAACAGTATTGCTTCAATTTTTGCCTGGTCACGAGGTCTTGCACATAGGGCAAAGTTGGATGGAAATGCTAGATTGCTGGACTTTACAGAGAAACTGGAAGCAGCTTGCATTGGAACAGTTGAATTGGGAAAGATGACAAAGGATCTTGCACTTCTTGTTCATGGACCTAAggTTTCTAGATCCCAGTATTTGAATACTGAAGAGTTCCTTGATGCTGTGGCTGAGGAGCTGCGAACAAGATTATCTTCACAATCAAAGCTGTAA 1251 0.3981 MGFQKIRVDNPIVEMDGDEMTRVIWKLIKDKLIFPYLELDIKYFDLGLPHRDATNDRVTIESAEATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDTVIEGPGKLKLVFAPSGNEEIKELEVYNFTGAGGVALSMYNTDESIRAFAEASMNIAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVFDTQWSHKFKAARIWYEHRLIDDMVAYALKSDGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACIGTVELGKMTKDLALLVHGPKVSRSQYLNTEEFLDAVAEELRTRLSSQSKL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1526 416 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 1 415 - -
Ssu8g1526 416 SMART Iso_dh_2 11 402 IPR024084 -
Ssu8g1526 416 Gene3D Isopropylmalate Dehydrogenase 4 415 - -
Ssu8g1526 416 PIRSF IDH_NADP 1 413 IPR004790 GO:0004450|GO:0006102
Ssu8g1526 416 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 273 292 IPR019818 GO:0000287|GO:0016616|GO:0051287
Ssu8g1526 416 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 4 411 IPR004790 GO:0004450|GO:0006102
Ssu8g1526 416 Pfam Isocitrate/isopropylmalate dehydrogenase 8 402 IPR024084 -
Ssu8g1526 416 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 410 - -
Ssu8g1526 416 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 1 415 IPR004790 GO:0004450|GO:0006102
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1526 Ssu-Chr8 31762520 31767854 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1526 K00031 - gmx:606295 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1526 8 31762520 31767854 Ssu8g1526 8 31762520 31767854 ECH