Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1521 ATGCCAGGCAATGGACAGTTAACAGTTCCTCCGGGCTTCAGGTTCCACCCTACTGATGAGGAGCTTCTCTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTCATCATGAGAAATAGATGTAGGGTTGGGTCAGGGCCTCAGAATGAGTGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACCAGAACAAATCGAGCAACTCCAGCTGGTTTTTGGAAAGCAACTGGAAGGGACAAGGCCATATACCACACCAATTCCTAG 288 0.4583 MPGNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIMRNRCRVGSGPQNEWYFFSHKDKKYPTGTRTNRATPAGFWKATGRDKAIYHTNS 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1521 95 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 92 - -
Ssu8g1521 95 PANTHER OS02G0252200 PROTEIN 5 92 - -
Ssu8g1521 95 ProSiteProfiles NAC domain profile. 9 95 IPR003441 GO:0003677|GO:0006355
Ssu8g1521 95 SUPERFAMILY NAC domain 5 93 IPR036093 GO:0003677|GO:0006355
Ssu8g1521 95 Pfam No apical meristem (NAM) protein 10 90 IPR003441 GO:0003677|GO:0006355
Ssu8g1521 95 Gene3D NAC domain 18 95 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1521 Ssu-Chr8 31559820 31560427 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1521 1 95 NAC Transcription Factor Family AT1G79580 73.832 1.79e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g1521 NAM 5.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1521 - - gmx:100789606 190.274