Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1519 ATGATGCCAGGCAATGGACAGTTAACAGTTCCTCCGGGCTTCAGGTTCCACCCTACTGATGAGGAGCTTCTCTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTCATCAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGGACCTAAAAGATAAATGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACCAGGACAAATCGAGCAACTACAGCTGGCTTTTGGAAAGCAACTGGAAGGGACAAGGCCATATACCACACTAATTCCAAGAGGATTGGCATGAGGAAAACCCTAGTTTTCTACACTGGCCGTGCTCCTCATGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGAGGCTGATATTCAAGAAGATGGGTGGGTGGTATGCAGGgtcttcaaaaagaaaaaccaaaatcgAGGTTTCCaacaagaaattgaagaagaagagcaCTTAACCCACATGAGAACAGGTGGTCCTTGCCAGGTTCTAGAGCCGAAACATCATATGCAAGGAGGACAATATGATTACAGCTTTGATGGGACATTGCACCTTCCGCAGTTGTTCAGTCCAGAATCAGCCGTTGCACCCACTACTTCCCTGGCCTCATCCATGAATGCCATGGATATCCTTGAGTGCTCTCAAAACTTGTTGAGGCTCACAACTACTGGCTGTGGACTTAATCTTATGCAACAAGGGGAGAGGTTCAGTGGTGACTGGTCATTCTTGGACAAGCTACTAGCATCCCACCATGGCATGGATCATCAGCATCCACAAAGCAAATGCAACCTTCCTACTCATCAAGCTGCAACTCCTGTCGGCACTTCAGCTCAGAAATTCCCATTTCATTACCTTGGCTGTGACACCCATGGTATTATGAAATTTTCCAAGTAG 966 0.441 MMPGNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDEADIQEDGWVVCRVFKKKNQNRGFQQEIEEEEHLTHMRTGGPCQVLEPKHHMQGGQYDYSFDGTLHLPQLFSPESAVAPTTSLASSMNAMDILECSQNLLRLTTTGCGLNLMQQGERFSGDWSFLDKLLASHHGMDHQHPQSKCNLPTHQAATPVGTSAQKFPFHYLGCDTHGIMKFSK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1519 321 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 307 - -
Ssu8g1519 321 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Ssu8g1519 321 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Ssu8g1519 321 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Ssu8g1519 321 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Ssu8g1519 321 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN-RELATED 6 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1519 Ssu-Chr8 31457031 31458694 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1519 2 321 NAC Transcription Factor Family AT1G79580 53.989 1.14e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g1519 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1519 - - gmx:100815632 588.571