Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1511 ATGCCAACTTTGATTTCATCTAGGTTTCTTTTGCTTGTTGGAGAGTCACTCCACATGAGAAGGGCTTTGGCCACTTCTAGGTCTGTTTTATTGCACACTAGGGTCAATTGTATGAGCCAGGTGGAACCCCAGCATGGTTCCCTCACCCTCTCTAGCATAGGTTTCCAAACTGAAATTGAACCCAGGAGCAGAAGCAGGGTTTCACCCTCTGAGAATCTCAAGAGCAAAGGAAAGCCCTTTGACATTAATGAGAAGAAGAAAGCTGTTTGGGCTATAGAGAAACAGCAAATAGAGTCTGCCCCTTTTGCTGCAAAGTCATTTGCAGAACTTGGCCTCCCACATGTGTTGATAGCAAGCCTGGAAAAGGAGGGTTTCACCATTCCGACTGAAGTTCAGTCTGCTGCAGTTCCCACCATTCTGAACAACCACGATGTCATAATTCAGTCTTACACAGGTTCGGGGAAGACGTTCGCTTATCTGCTTCCTATACTCTCAGTTGTTGGGCCGCTGAGGGACAAAATTCCTGAAGGTGACGGTGATGGTGGGGAGAGTGGGAAGAAGTTGGGAATTGAAGCAGTGATTGTTGCTCCTTCTAGGGAACTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTAGGAATGGATAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACCAGGCAAGAAGAAGCACTCAAGAAAAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGGATAGCGGAGCTTAGTGCATCCGGGAAACTTCGCACTCACGGTTGTCGATATTTGGTATTAGATGAAGTTGATGAACTCTTGTCATTCAATTTCCGGGAAGACATGCATCGGATATTGGAACATGTAGGGAGGAGATCAAGTGTGGACCCAAACTCGAATTCTAGAAAGGCTGAGCGTCAGTTAATTATGGTTTCTGCAACTGTGCCGTTTTCTGTTGTGAGGGCAGCTAGGAGCTGGGGTTGTGACCCTCTTCTTGTCCAAGCTAAGAAAGTTGTACCACTTGAAACTGTCTCTCCCTCTGAGCCTGTCAATTTGTCACGGTCTTCGCCCAGCTCAAGTTCTAGCTCAGCTATGCCATCTCAGGCAGCGGCAGAGAGTCTACCTCCTGCGTTGAAGCACTATTACAGTGTAACAAGGTTGCAGCACAAAGTTGATACCTTGAGAAGGTGTGTTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCACACTAAGCAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCTGCTGAGTTACATGGGGATCTTGGGAAGCTTGCGAGGTCAACAACTctgaagaaattcaagaacgGTGAGGTGAGGGTTCTGGTGACAAATGAATTATCAGCAAGGGGTTTGGATGTAGCAGAATGTGATCTTGTGGTTAATCTGGACTTGCCGACAGATTCAATTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTTGGTAGGCATGGTACAGTGCTAACCATATGTGAAGAGCCAGAAGTGTTTGTTGTGAAGAAATTGCAGAAGCAACTGGGAATACCAATTTCATCCTGTGATTTTGCTAAGGGGAAGCTACTTGTCACTGAAGAAGAGAAAACAGTAAGCACTTCCAGAAGATGA 1665 0.4631 MPTLISSRFLLLVGESLHMRRALATSRSVLLHTRVNCMSQVEPQHGSLTLSSIGFQTEIEPRSRSRVSPSENLKSKGKPFDINEKKKAVWAIEKQQIESAPFAAKSFAELGLPHVLIASLEKEGFTIPTEVQSAAVPTILNNHDVIIQSYTGSGKTFAYLLPILSVVGPLRDKIPEGDGDGGESGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSSVDPNSNSRKAERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVVPLETVSPSEPVNLSRSSPSSSSSSAMPSQAAAESLPPALKHYYSVTRLQHKVDTLRRCVHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRHGTVLTICEEPEVFVVKKLQKQLGIPISSCDFAKGKLLVTEEEKTVSTSRR 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1511 554 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 534 - -
Ssu8g1511 554 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 105 133 IPR014014 GO:0003724
Ssu8g1511 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 522 IPR027417 -
Ssu8g1511 554 SMART helicmild6 421 502 IPR001650 -
Ssu8g1511 554 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 337 IPR014001 -
Ssu8g1511 554 Pfam DEAD/DEAH box helicase 129 323 IPR011545 GO:0003676|GO:0005524
Ssu8g1511 554 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 534 - -
Ssu8g1511 554 CDD DEADc 116 338 - -
Ssu8g1511 554 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 541 IPR001650 -
Ssu8g1511 554 Pfam Helicase conserved C-terminal domain 403 502 IPR001650 -
Ssu8g1511 554 Gene3D - 379 542 IPR027417 -
Ssu8g1511 554 MobiDBLite consensus disorder prediction 350 373 - -
Ssu8g1511 554 SMART ultradead3 124 357 IPR014001 -
Ssu8g1511 554 MobiDBLite consensus disorder prediction 348 374 - -
Ssu8g1511 554 CDD SF2_C_DEAD 382 511 - -
Ssu8g1511 554 Gene3D - 71 339 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1511 Ssu-Chr8 31245396 31247060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1511 106 531 Eukaryotic Initiation Factors Gene Family AT3G19760 24.356 6.36e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1511 - - gmx:100812968 943.34