Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1499 ATGGCTCCAATGAGTCTCCCACCTGGATTTAGGTTCCACCCCACTGATGAAGAGCTTGTTGCATACTacttggaaagaaaaataacaggTCGCTCAATAGAGCTTGACATCATCGCTGAAGTTGATTTATACAAGTGCGAACCTTGGGACTTGCCAGataaatCATTTCTCCCCAGCAAGGACATGGAGTGGTACTTTTACAGTCCTAGGGACAGGAAGTACCCAAATGGGTCAAGAACTAACAGGGCAACACAAGCTGGATACTGGAAAGCTACTGGGAAAGATAGGCCAGTGCACTCTCAGAAGAAGCCAGTTGGCATGAAGAAGACATTGGTATACTACAGAGGTAGAGCACCACATGGGATTAGAACCAACTGGGTTATGCATGAATACCGCTTAATTGAATCAGTGCCTGGTGCTGCTCTCTCATCTTTGAAGGATTCATATTCGTTGTGTCGCATTTTCAAGAAGACGATTCAAATTCCAGCCAAagctaaagaagaagaagaacaagctGAGCATGCAAAGAAGGAATCGATGTGGATCTCAGAAGAACAAGGGTTAGGGGAAGACTCAAGTGGCACTGAGATTTCTAGAGAAATGGAAACAGTGGATGACAAAGTTCTCAATCATGAACACCCTAAATTTCCTTGTGACGCTTCTTCCTCTGACCTAACTCAAGGAACATGTACACCCACAGATACCGGTATAGCAGAAGATTTTCAACCACAATTTGCATGTGATGAAGCAAACAGTGCAGCGAATTCATATTCAATGGGAATAGGATACCCCACAAATCTATTTCAGGATTTAGAAATACCTACCTATGCTGGCATGCATTATCAATTCCCATACACACCTTTGGTGCTGGACGATTTCCCACAGATAAATTTACCGGAGACAAAGTCAACGAAGCCGGAAATGACTGATGACTGCATGTTGTATGACAGATACCGGGACTGTATGAATGGAACACTAGAAGAGATCATCTCTTTGTGTTGCTCTCAAGATAATTCCGTCCCTTTTCCCATGCTTGAATGA 1041 0.4169 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKPVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESVPGAALSSLKDSYSLCRIFKKTIQIPAKAKEEEEQAEHAKKESMWISEEQGLGEDSSGTEISREMETVDDKVLNHEHPKFPCDASSSDLTQGTCTPTDTGIAEDFQPQFACDEANSAANSYSMGIGYPTNLFQDLEIPTYAGMHYQFPYTPLVLDDFPQINLPETKSTKPEMTDDCMLYDRYRDCMNGTLEEIISLCCSQDNSVPFPMLE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1499 346 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Ssu8g1499 346 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Ssu8g1499 346 MobiDBLite consensus disorder prediction 164 196 - -
Ssu8g1499 346 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 168 - -
Ssu8g1499 346 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Ssu8g1499 346 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 168 - -
Ssu8g1499 346 MobiDBLite consensus disorder prediction 164 184 - -
Ssu8g1499 346 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1499 Ssu-Chr8 30423664 30427575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1499 1 331 NAC Transcription Factor Family AT1G54330 52.994 6.73e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g1499 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1499 - - gmx:100808325 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1499 8 30423664 30427575 Ssu8g1499 8 30423664 30427575 ECH