Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1497 ATGGGCCACCGTTGCTGCAGCAAACAGAAGATCAAAAGAGGATTATGGTCTCCTGAAGAAGATGAGAAACTTATCAGATACATCAACACGCATGGACATAAGAGTTGGAGCTCTGTGCCAAAATTTGCAGGCGGGCATTTTTTTCttggatataattttatagGCTTGCAGAGATGTGGGAAGAGTTGCAGGTTGAGATGGATTAATTATCTGAGGCCAGATCTGAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGATCATAATTGACATTCATAGAATTCTTGGAAACAGGTAA 297 0.4074 MGHRCCSKQKIKRGLWSPEEDEKLIRYINTHGHKSWSSVPKFAGGHFFLGYNFIGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNR 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1497 98 CDD SANT 16 71 IPR001005 -
Ssu8g1497 98 Pfam Myb-like DNA-binding domain 13 71 IPR001005 -
Ssu8g1497 98 Gene3D - 10 77 - -
Ssu8g1497 98 ProSiteProfiles Myb-like domain profile. 8 71 IPR001005 -
Ssu8g1497 98 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 75 IPR017930 -
Ssu8g1497 98 PANTHER MYB DOMAIN PROTEIN 55 1 98 - -
Ssu8g1497 98 SUPERFAMILY Homeodomain-like 15 98 IPR009057 -
Ssu8g1497 98 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 98 IPR017930 -
Ssu8g1497 98 PANTHER BNAC05G40480D PROTEIN 1 98 - -
Ssu8g1497 98 SMART sant 12 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1497 Ssu-Chr8 30404520 30405043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1497 1 98 MYB Transcription Factor Family AT3G12720 76.531 4.14e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu8g1497 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1497 K09422 - gmx:100791209 180.259