Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1495 atGGAGAGAATGTTCCCTCCCAAGAAGCCCTCAACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGGGACTCGGGTCTTGTCCTCACCACTGACCCAAAGCCTCGCCTCCGTTGGACTGTTGAGCTCCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGGCCTGATAAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTTCAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGCTTCGGCTTTAGAATTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGATAACTCACACATGGTTGATGCGATTAGGATGCAAATAGAGGTGCAGAGAAGACTGCATGAACAACTGGAGGTTCAAAAACACCTTCAGCTAAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAGAAGGCGTATCATACACTTGCCGGTGAAAACATGGCATCTGCTGCCACTAACTTAAAGGGTGCTATTGGACCTCATCAAGGCATCCCTGACATGGGAGTGATGAAGGAGTTTGGTTCCCCTCttggtttttcttcttttcaagaTCTTGACAATATTTATGGAGGTGACCAAATTGACCTTCAGCAGAACATGGAGAAGCCACCCCTTGATCACGGGTTTATGCCAATCAATGAGAGTTTGTGCCTGGGGAAGAAGAGGTCCAACCCTTATAGCGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGATCTCAGGCTTCAAGACTTGGGGGGGCCAGCCTCATCATGTCTTGGCCCCCAAGATGACCCTTTCAAAGGTGACCAGATTCAGATTGCACCACCAGCATCATTGGATAGAGGCACTAGTACTGACATTGATCCCATGTCAGAGATCTATGACTCAAAGCCTGTGCTTCAGGGTGAAGCTGTAATGGGGGAAAAAAAGTTTGATGCATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAGCACCTCTTCAGGCTGAAAGGATGAGTCCTATGATCAGTACTGGTACCATGGCACAAGGTAGAGGCTCACCATTTGGGTGA 1149 0.4726 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNDNSHMVDAIRMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYHTLAGENMASAATNLKGAIGPHQGIPDMGVMKEFGSPLGFSSFQDLDNIYGGDQIDLQQNMEKPPLDHGFMPINESLCLGKKRSNPYSGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDQIQIAPPASLDRGTSTDIDPMSEIYDSKPVLQGEAVMGEKKFDASMKLERPSPRRAPLQAERMSPMISTGTMAQGRGSPFG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1495 382 MobiDBLite consensus disorder prediction 1 20 - -
Ssu8g1495 382 Gene3D - 34 92 - -
Ssu8g1495 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 331 IPR044848 GO:0003700
Ssu8g1495 382 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Ssu8g1495 382 Pfam MYB-CC type transfactor, LHEQLE motif 134 178 IPR025756 -
Ssu8g1495 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 331 - -
Ssu8g1495 382 MobiDBLite consensus disorder prediction 343 357 - -
Ssu8g1495 382 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Ssu8g1495 382 MobiDBLite consensus disorder prediction 343 382 - -
Ssu8g1495 382 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Ssu8g1495 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1495 Ssu-Chr8 30279473 30281505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1495 4 382 G2-like Transcription Factor Family AT1G79430 55.949 2.44e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu8g1495 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1495 - - ccaj:109805894 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1495 8 30279473 30281505 Ssu8g1495 8 30279473 30281505 ECH
Ssu8g1495 8 30279473 30281505 Ssu2g0469 2 27044666 27047255 PCT