Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1492 ATGGCAGCACTGAACCTTAGCCGCATGGCACTGCGATCCTCGAAGCCTCTCTCTCGCCCTTCCCATCTTCTCTCTGTTCGGTTGCAGATGCAGATGATGCAGTCCTCTTCTCCTCCCCTCACCCGAAAGATGAGCATGGATGCACAGAATGTTGCTTCCCTGATTAATAGTTCTGGATTGTTGAGGACTCAGGGTCTTATTGGAGGGAAATGGAGTGATGCTTATGATGGCAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATTGTAGATGTTGCATGCATGGGTGGAAGAGAGACAAATGATGCAATTTCTGCAGCCTATGATGCATATAGATCATGGAGCAAAACCACTGCTGCTGAGCGAAGCAAATTTCTGAGGAAATGGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAACTTATAACCTTGGAGCAAGGGAAACCTCTCAAGGAGTCTATGGGTGAGATAAACTATGGGGCTGGCTTCATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTTTATCTGATCGGCGATTATTTGTTCTAAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGCTCATAAAGCCCTCTGAACTCACGCCTCTCACTGCTTTAGCTGCAGCAGAACTCTCCATTCAAGCTGGAATACCAGCGGGTGTAGTGAATGTGGTGATGGGAAATGCTCCTGATATTGGGAACGCTTTACTTGCAAGTCCACAGGTAAGGAAGATCACATTCACAGGCTCGACGGCTGTTGGAAAGAAATTGATGGCTGGTTCTGCTGAGACAGTTAAAAAAGTTTCTCTGGAACTTGGTGGCAATGCACCGTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAATAGTGGACAAACATGCGTTTGTGCAAATAGAATTATTGTGCAAGAAGGTATATATGAGAAATTTGCAAATGCTTTGCGTGATGCTGTTCAGAATATGAAAGTTGGGGATGGTTTTAGTGAAGATGTGGTGCagGGCCCTCTAATCAATGAAGCTGCTGTCAAAAAGGTTGAGTCCTTAATTCATGATGCTACATCAAAGGGAGCAAAAGTAATTCTTGGTGGTAAAAGACATAGCCTTGGATTTACTTTTTATGAACCGACGGTCATTGGTGATGTTGATAGTGATATGCGCATATCAAGAGAGGAAGTATTTGGTCCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCCATCAGAATTGCTAATGACACTAACGCAGGTTTGGGTTCATACATATTTACAAACAGTATCCAACGATCGTGGCGTGTTGCTGAGGCTCTTGAATATGGACTTGTGGGTGTTAATGAAGGAGTAATTTCAACTGAGGTGGCTCCATTTGGTGGTTTTAAACAGTCTGGTCTTGGAAGAGAAGGCTCCAAATATGGGATGGATGAATATTTAGAGGATGTTTACCAAATGCAGTTTGCACAAGGCGTCAGTATTGTGTCAATTGTCAAACATGGATATGCCTTCGCTCTTggagttctaatgcttcatgtGAAGCTCTACATTGAATAA 1692 0.4303 MAALNLSRMALRSSKPLSRPSHLLSVRLQMQMMQSSSPPLTRKMSMDAQNVASLINSSGLLRTQGLIGGKWSDAYDGKTIKVYNPATGESIVDVACMGGRETNDAISAAYDAYRSWSKTTAAERSKFLRKWYDLLMVHKEELAQLITLEQGKPLKESMGEINYGAGFIEFAAEEAKRIYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVLIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPDIGNALLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRIIVQEGIYEKFANALRDAVQNMKVGDGFSEDVVQGPLINEAAVKKVESLIHDATSKGAKVILGGKRHSLGFTFYEPTVIGDVDSDMRISREEVFGPVAPLLRFKTEEDAIRIANDTNAGLGSYIFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEDVYQMQFAQGVSIVSIVKHGYAFALGVLMLHVKLYIE 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1492 563 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 526 - -
Ssu8g1492 563 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 334 345 IPR016160 GO:0016491
Ssu8g1492 563 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 82 526 IPR010102 GO:0009013|GO:0009450
Ssu8g1492 563 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 77 524 IPR016162 GO:0016491
Ssu8g1492 563 Pfam Aldehyde dehydrogenase family 73 526 IPR015590 GO:0016491
Ssu8g1492 563 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 306 313 IPR029510 GO:0016491
Ssu8g1492 563 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 526 - -
Ssu8g1492 563 SUPERFAMILY ALDH-like 50 526 IPR016161 GO:0016491
Ssu8g1492 563 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 310 499 IPR016163 GO:0016620
Ssu8g1492 563 CDD ALDH_F5_SSADH_GabD 82 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1492 Ssu-Chr8 30159497 30185830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1492 42 529 Aldehyde Dehydrogenase Gene Family AT1G79440 79.508 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1492 K17761 - gmx:100808318 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1492 8 30159497 30185830 Ssu8g1492 8 30159497 30185830 ECH