Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1488 ATGGACCAAAATCGACGAAGGCGATCAACAAGATTGGCCGCTTCTCAGGCCCAAGTCTATGTGACAAACCAGCATGAACGCAACCAGCACATGCTATCAGCCACCACCAATTCTCGAGCCCATGTCAGAAGCCAACGTGAACGCCTTCAGCCCATGGCATCACCCCTTGCCAATTCCCGAGCTCATGTCCCAAACCAAAGTGAGCGTACTCAGCCTATGTCATCACCCTCCACTGATTCTGAAGCCCATTCAGCCTTGTCAACCATCCCCAGAGGCCCACCCCAGCCCGAACCCCTCTTCGACCTACAGCTCCAACTCTTCAACTTCTGGGCCCAACAGCACCAAGAAGTTGAGAACACCATCGATTTTAGGACCCATTCCCTACCCCTGGCCCGGATCAGAAGGATCATGAAAAGAGATGAGGATGTGAGGATGATATCTGCTAATGCATGTGTTGTATTTGCCAAGGCGTGTGAGATCTTCGTCAAGGAACTCACAACAAGGTCTTGGGTCCATGCTGAGGAGAACAGGAGAAGGACCCTCCAGAGGGGTGACATTGCAACTACAATTGCCCAAACTGACGTGTATGATTTTTTGGTGGATACTGTTCCTAGGGATGACACAATGGAGCATGATGTGTTCACAGgCATTTACAGAGCTGGTGGAAGTGCTGGGAATATTAGGATTGCTCCTGATTATCAACCTATGCCACCACCACCTAGTAATGTCATGGGTACACCTTACGGACATCCTAGGGTGATTATGGGAAGGAGTGTTTCAAAACAGGCTCGTGTTGGGAACCGTGTGACTCATTCTATGGCAGCTCGAGCATGGCCACAGCAGCAACAACAGGATGATGCTCCTCCAGGTTCTGATGATAATTGA 885 0.5017 MDQNRRRRSTRLAASQAQVYVTNQHERNQHMLSATTNSRAHVRSQRERLQPMASPLANSRAHVPNQSERTQPMSSPSTDSEAHSALSTIPRGPPQPEPLFDLQLQLFNFWAQQHQEVENTIDFRTHSLPLARIRRIMKRDEDVRMISANACVVFAKACEIFVKELTTRSWVHAEENRRRTLQRGDIATTIAQTDVYDFLVDTVPRDDTMEHDVFTGIYRAGGSAGNIRIAPDYQPMPPPPSNVMGTPYGHPRVIMGRSVSKQARVGNRVTHSMAARAWPQQQQQDDAPPGSDDN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1488 294 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 101 289 - -
Ssu8g1488 294 SUPERFAMILY Histone-fold 108 199 IPR009072 GO:0046982
Ssu8g1488 294 MobiDBLite consensus disorder prediction 274 288 - -
Ssu8g1488 294 MobiDBLite consensus disorder prediction 25 97 - -
Ssu8g1488 294 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 101 289 - -
Ssu8g1488 294 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 127 188 IPR003958 -
Ssu8g1488 294 Gene3D Histone, subunit A 100 205 IPR009072 GO:0046982
Ssu8g1488 294 MobiDBLite consensus disorder prediction 262 294 - -
Ssu8g1488 294 MobiDBLite consensus disorder prediction 25 40 - -
Ssu8g1488 294 MobiDBLite consensus disorder prediction 59 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1488 Ssu-Chr8 30078509 30080383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1488 108 256 CCAAT-HAP5 Transcription Factor Family AT1G54830 54.000 3.10e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ssu8g1488 CBFD_NFYB_HMF 1.1e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1488 K08066 - aprc:113855583 279.256