Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1470 ATGGATAAATCAGAGCAGACTcaacagcagcagcagcagcagcagcagcagcaacaacagcaTGTGATGGGAGTTGCTGCAGGTGCTAGCCAAATGGCCTATTCTTCTCACTACCCAACTGCTCCCATGGTGGCTTCTGGCACACCTGCTGTAGCTGTTCCTTCCCCGACACAGGCTCCAGCTGCCTTCTCTAGTTCTGCTCACCAGCTAGCATACCAGCAAGCACAgcatttccaccatcaacagcAGCAACACCAACAACAGCAGCTTCAAATGTTCTGGTCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCACAGTCTCCCTCTTGCTCGGATAAAGAAGATAATGAAAGCTGATGAAGATGTCCGGATGATTTCAGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACATTGCGATCTTGGATCCACACTGAAGAGAACAAGAGGAGAACACTACAAAAGAATGATATAGCAGCTGCTAtttcaagaaatgatgtttttgatttcttggttGATATTATTCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCACTAGTGGGTTCTCCAGCTGACATGCCATTTTATTATGTCCCTCCACAGCATCCTGTAGGACCTCCTGGAATGATCATGGGAAAGCCAGTTGATCAAGCAGCGCTATATTCTACACAGCAGCCTCGACCTCCCATGGCTTTCATGCCATGGCCCCAAACACAGCCCCAGCAACAGCAGCCaccccaacaacaacaaacagaTTCATGA 822 0.3978 MDKSEQTQQQQQQQQQQQQQHVMGVAAGASQMAYSSHYPTAPMVASGTPAVAVPSPTQAPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVGSPADMPFYYVPPQHPVGPPGMIMGKPVDQAALYSTQQPRPPMAFMPWPQTQPQQQQPPQQQQTDS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1470 273 MobiDBLite consensus disorder prediction 1 24 - -
Ssu8g1470 273 MobiDBLite consensus disorder prediction 241 273 - -
Ssu8g1470 273 SUPERFAMILY Histone-fold 68 183 IPR009072 GO:0046982
Ssu8g1470 273 Pfam Core histone H2A/H2B/H3/H4 75 174 IPR007125 GO:0003677
Ssu8g1470 273 Gene3D Histone, subunit A 72 189 IPR009072 GO:0046982
Ssu8g1470 273 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 14 267 - -
Ssu8g1470 273 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 14 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1470 Ssu-Chr8 29529164 29529985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1470 90 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 88.462 1.34e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ssu8g1470 CBFD_NFYB_HMF 2.4e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1470 K08066 - gmx:100796987 417.542