Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1467 ATGGACCAACCCCAACTCTTACACGACCCAAACTTCCCCCTCTTCAAAACCCCTCGCAAAACCCCCCACAAACCCCCCTCTCCCTCCCCCGccaccaccgccaccgccaCAAACCCTAACTCCGACGCGGGGCTACACGAAAGCCCCGACGCCACCGCCCCCGATGCCGAGACGTTCGGCGACCTCGGGCTCGCGGAATGGGCGGTGAAGACGTGCCGGGAGCTCGGGATGCGGAAGCCGCGGCGCGTGCAGCGGCGGTGCATCCCGCGGGTCCTGGAGGGCAGGCACGTGCTGGGCATCGACGAGACCGGGAGCGGGAAGACGGCGGCCTTCGCGCTCCCGATCCTGCACCGCCTCGCCGAGCACCCGTTCGGCGTGTTCGCGCTCGTGGTGGCGCCCACGCGCGAGCTCGCGTTCCAGCTCGCGGAGCAGTTCCGCGCGCTGGGCTCCGCCGTGCACCTCCGCATCGCAGTGGTGGTCGGCGGCATGGACATGCTCAAGCAGGCGAAGGAGTTGGTCGCTAGGCCGCACCTCGTCATCGCCACCCCGGGGAGGATCCACCTCTTGCTCCGCGATAACCCTGATATTCCTCCTGTTTTCTCCAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTCCTGGATGTTGGTTTTCAGGAGGAATTGAAATTTATCTTTCGGTGCTTACCAGAAAACCGGCAAAATCTGTTCTTTTCTGCTACAACGACAAGTAATCTGCAAAAATTGCGTGAACGTTACCAAGATAAGCTGTATGTTTATGAGGCATATGAAGGCTTTAAAACAGTTGAAACACTTGAGCAACAGGTTATATTCATCCCTAGAAAGGTGAAGGATGTATATTTGAtgcatattttgtctaaaatggAAGAAATGGGCATTCGATCTGCCATTGTATTTATCTCAACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGCAGCAGCAGCTCTATATTCATTCAAATCACAAGCTCAGAGGCTTGAAGCACTTCATCAATTTAAATCAGGAAAGGTTTCTGTACTACTAGCAACTGATGTTGCCAGCCGCGGTTTGGATATTCGTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATTCATCGCGTAGGTCGTACAGCAAGAGCAGGTAGAGGGGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGATCTTATTCGGGAAATAGAAGCTCTTATTGAGCGTCAACTTGAAATGATCGAATATAAAGAAAACGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAAGATGATAGATGATGGCTTTGAGGAGAAAGCCAAAGAGCGGAAAAAACAGAAGCTGACAATGCTAGCAGAGAAAGGATTGTTAAAggagaaaagtaaaaagagaaaacgaaataaagaatttacagaggaaaggaaagaaccaaaaaaagagGTTTTCAGTGCTAAGAATGTGGCAGAAGTGAAGATGATGGATGAGGATGGCATTGAGGAGAAAGCAAAAGAGCGGGGGAAACAAAAACTGAAAATGCCAACAGAGAAAggtttgttaaagaaaaaaaagttaaaagaaaggaataaaGAATTTGCAAAGGCAGGCAAAAAACAGAAAGAAGAGGAGGTAGAAGTATTAGCAGACATAGCAACTTCAAAGAAAAGGAGTAAGAAGAGACagtaa 1746 0.4599 MDQPQLLHDPNFPLFKTPRKTPHKPPSPSPATTATATNPNSDAGLHESPDATAPDAETFGDLGLAEWAVKTCRELGMRKPRRVQRRCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVAPTRELAFQLAEQFRALGSAVHLRIAVVVGGMDMLKQAKELVARPHLVIATPGRIHLLLRDNPDIPPVFSRTKFLVLDEADRVLDVGFQEELKFIFRCLPENRQNLFFSATTTSNLQKLRERYQDKLYVYEAYEGFKTVETLEQQVIFIPRKVKDVYLMHILSKMEEMGIRSAIVFISTCRDCHRLSLMLEVLDQAAAALYSFKSQAQRLEALHQFKSGKVSVLLATDVASRGLDIRTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIEALIERQLEMIEYKENEVLSLMKKVFSAKNVAEMKMIDDGFEEKAKERKKQKLTMLAEKGLLKEKSKKRKRNKEFTEERKEPKKEVFSAKNVAEVKMMDEDGIEEKAKERGKQKLKMPTEKGLLKKKKLKERNKEFAKAGKKQKEEEVEVLADIATSKKRSKKRQ 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1467 581 MobiDBLite consensus disorder prediction 517 574 - -
Ssu8g1467 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 416 IPR027417 -
Ssu8g1467 581 MobiDBLite consensus disorder prediction 30 45 - -
Ssu8g1467 581 SMART helicmild6 315 396 IPR001650 -
Ssu8g1467 581 MobiDBLite consensus disorder prediction 1 57 - -
Ssu8g1467 581 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 88 261 IPR014001 -
Ssu8g1467 581 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 56 489 - -
Ssu8g1467 581 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 207 215 IPR000629 -
Ssu8g1467 581 Gene3D - 29 260 IPR027417 -
Ssu8g1467 581 Coils Coil 542 563 - -
Ssu8g1467 581 PANTHER RNA HELICASE 56 489 - -
Ssu8g1467 581 CDD DEADc_DDX49 59 262 - -
Ssu8g1467 581 SMART ultradead3 76 276 IPR014001 -
Ssu8g1467 581 Pfam Helicase conserved C-terminal domain 289 396 IPR001650 -
Ssu8g1467 581 MobiDBLite consensus disorder prediction 479 499 - -
Ssu8g1467 581 Coils Coil 413 433 - -
Ssu8g1467 581 CDD SF2_C_DEAD 273 405 - -
Ssu8g1467 581 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 288 435 IPR001650 -
Ssu8g1467 581 MobiDBLite consensus disorder prediction 517 581 - -
Ssu8g1467 581 Pfam DEAD/DEAH box helicase 82 250 IPR011545 GO:0003676|GO:0005524
Ssu8g1467 581 Gene3D - 261 435 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1467 Ssu-Chr8 29490017 29497062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1467 40 425 Eukaryotic Initiation Factors Gene Family AT3G19760 28.792 1.11e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1467 K14778 - gmx:100804060 913.294