Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1458 ATGATGGCACTAAGCACGTTCTTCAACTGGGACACACTTCAAATTCCCAACTCAGAAACAAGCATCTTCCATGAATCCATGCCAGAAGAAGCAGCAGCACCAAACCTCCAGCACTTTTTGCCCTACTCAGATGAAAGCTTCTTCCTTTCAAACGCGCTTTTTGAGAACTATTTTGACCCAACTGGTGGTTTTCTCTACCCTGCAGAGATCTACCCTCCTTATGATCCCTTCATTTCACTCGCTCATCATGATATTCTCCCAACTCATGAAGATTACAATCTTCTCCCATGCCCTAAACGCCAAAAGTACTGCTATgaggaacaagaacaagaacaacaacgaCACGTGCACTCTTCACTGCAAGAGCTTACTACACCAACAGCACCATCCAATTTCTTAGATGGGTTTGTTGCGCCTTATGATAATTGTTGCTCCTTGCAACAAGAACTCTTCTCTGAGGTTCCACAACATGGTGCTTGGGTTGATCTTCAGTGTGAGAAGAAAGGTAACGAGAGAACCATATCTCCACAGAGCGTAGCGGcaagagaaaggagaagaaagatcACTGAGAAGACCCAAGAGCTTGGAAAGTTGGTTCCTGGTGGACCAAAGATGAACACAGCTGAGATGCTTCATGCAGCTGCAAAGTATGTTAAGTACCTTCAAGCCCAAGTTGAAATGCTTGAACTCATGAAGACACTCAAGGAAGATAAAGCAGCACCTCCTTCTGAAATTCTACACGCTCTGGTTATTTCTCCCTTTGTTCAAGAGAAGTTGTACACGGAGGAAAGGTGCTTTattctaaaagaaattgtcatCACTTTGACAAATCACGAGGATGTTCAATCAAGACCTACCATCTTTGAGGATCTTAAACAGCTGATTGGGACAGACATTGAGAAGAAAGCAAAGCAAGAATAA 921 0.4061 MMALSTFFNWDTLQIPNSETSIFHESMPEEAAAPNLQHFLPYSDESFFLSNALFENYFDPTGGFLYPAEIYPPYDPFISLAHHDILPTHEDYNLLPCPKRQKYCYEEQEQEQQRHVHSSLQELTTPTAPSNFLDGFVAPYDNCCSLQQELFSEVPQHGAWVDLQCEKKGNERTISPQSVAARERRRKITEKTQELGKLVPGGPKMNTAEMLHAAAKYVKYLQAQVEMLELMKTLKEDKAAPPSEILHALVISPFVQEKLYTEERCFILKEIVITLTNHEDVQSRPTIFEDLKQLIGTDIEKKAKQE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1458 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 231 IPR036638 GO:0046983
Ssu8g1458 306 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 2 290 - -
Ssu8g1458 306 Pfam Helix-loop-helix DNA-binding domain 182 222 IPR011598 GO:0046983
Ssu8g1458 306 Gene3D - 172 240 IPR036638 GO:0046983
Ssu8g1458 306 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 2 290 - -
Ssu8g1458 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Ssu8g1458 306 SMART finulus 178 227 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1458 Ssu-Chr8 28309146 28310929 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1458 65 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 38.824 4.60e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g1458 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1458 - - gmx:102665938 449.899