Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1456 atgaTGGCACTAAGCACGTACTTAAACTGGGACACTCTTCAAATTCCCAATTCCGAAACAAGCACCTTCCATGAAGCCATGCCAGAAGAAGCAGCACCAAATCCCCAACACTTTTTTCCCTACTCAGATGAAAGCTTCTTCCTTTCAAACGCGCTTTTTGAGAACTACTTTGATCCAACTGGTGGTTTTCTCTACCCTGCAGAGATATACCCTCCTTGTGATCCCTTCATTTCACTCACTCATCATGACATTCTCCCAACTCATGAAGACTACAATCTTCTCCCATGCCCTAAACGCCAAAAGTACTGCTATgaggaacaagaacaacaacaacacatgCACTCTTCATTGCAAGAGCTTATTACACCAACAGTACCATCCAGTTTCTTAGATGGGTTTGTTGTGCCTTATGATGATCAACAAGAACTCTTCTCTGAGGTTCCACAATATGGTACTTGTGTGGATCTTCAGTGTGAGAAGAAAGGTAACGAAAGAACCATATCGCCACAGAGCATAGCGGcaagagaaaggagaagaaagatcACTGAGAAGACTCAAGAGCTTGGGAAGTTGGTTCCTTGTGGACCAAAGATGAACACAGCTGAGATGCTTCATGCAGCTGCAAAGTACGTTAAGTACCTTCAAGCCCAAGTTGCGATGCTTGAACTCATGAACACACTCAAGGAAGATAAAGCAGCACCTTCTTCTGAAATTCTACACGCTCTGGTTGCTTCTCCCTTTGTTCAAGAGAAGTTGTACACGGAGGAAAGATGCTTTGTTCCAAAAGAAACTGTCACCACTTTGACAAATCATGAGGATGTTCAGTCAAGACCTCCCATCCTTGAGGATCTTAAACAGCTGATTGGGACAGACATTGAGGAGAAAGCAAAGCAAGAATAA 900 0.41 MMALSTYLNWDTLQIPNSETSTFHEAMPEEAAPNPQHFFPYSDESFFLSNALFENYFDPTGGFLYPAEIYPPCDPFISLTHHDILPTHEDYNLLPCPKRQKYCYEEQEQQQHMHSSLQELITPTVPSSFLDGFVVPYDDQQELFSEVPQYGTCVDLQCEKKGNERTISPQSIAARERRRKITEKTQELGKLVPCGPKMNTAEMLHAAAKYVKYLQAQVAMLELMNTLKEDKAAPSSEILHALVASPFVQEKLYTEERCFVPKETVTTLTNHEDVQSRPPILEDLKQLIGTDIEEKAKQE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1456 299 Pfam Helix-loop-helix DNA-binding domain 173 215 IPR011598 GO:0046983
Ssu8g1456 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Ssu8g1456 299 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 2 284 - -
Ssu8g1456 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 225 IPR036638 GO:0046983
Ssu8g1456 299 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 2 284 - -
Ssu8g1456 299 Gene3D - 164 234 IPR036638 GO:0046983
Ssu8g1456 299 SMART finulus 171 220 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1456 Ssu-Chr8 28281526 28283448 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1456 64 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 36.220 2.93e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g1456 HLH 8.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1456 - - gmx:102665938 449.899