Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1448 ATGGCCTCTGCCACCACTCTCTTCTCCTCTAACCCCATGTTTTCCACCGACCaccactctctctctccctctccaaCCGATCCCAAATCCTTTACTGGACTCTGCAAGCCCTTCCATTCAAGGGTTCCCACTTCCATCCCCTTCTTCCATTGCAGAAGACCAAGATTCTTTGTCAGGGCCACTGTTATAAAGTGGAGATGTCCAAAGCAAACTCTCCCTCCCAAATGTGATACCGGTTTCCAAAAGAAACTCTTGTATCTGGAATCTATCGGTATCGACTCTTTCTCACTTATTGAAAACCATCCAATGCTGATCACCACCTCTCTTGCTGACATAAAATCCACCGTGGAATACATTACCTCCATGGATTTCACTGCAATTGAGTTTCGGCGTATGGTTGGCATGTGCCCCGAGATTCTGACCACCCAGGTCTCAGACATCATACCTGTCTTCACCTTCCTTCATCGTGAGGTTCACGTGCATGGCTCAGATATTAAGAGGGTCATAAATCGTCGCCCCAGGTTGCTCGTCTGCAGTGTTAGTAAGCAACTTCGACCTACCCTATACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAACACACCGACTTGCTGTCATGTAGTGTTGAGGAAAAGTTCATGCCCAGGATTGATTGCTTTGAGAATATTGGGTTTTCTCGCCGCGATGCAACTTCAATGTTTCAAAGATTTCCTCCGCTGTTTTGTTATAGTATTAAGAATAATTTGGAGCCTAAATACAGTTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAACTGAAAGAATTTCCTCAGTATTTCTCATTTAGCCTAGAGAATAGAATTAAGCCTAGGCATAAAAAGTGTGTAGAAATGGGGGTGTGTTTTCCGCTCCCTGCCTTGTTAAAAACAAGTGAGGCGAGATTTCAAAGTAGATTAGACGTATGTGTAAATTCTTCGACACCCTTGAAAACATCTCCTCTGTGGTGCGCTGGTTGTGATGTTTATGATgtatag 1020 0.4284 MASATTLFSSNPMFSTDHHSLSPSPTDPKSFTGLCKPFHSRVPTSIPFFHCRRPRFFVRATVIKWRCPKQTLPPKCDTGFQKKLLYLESIGIDSFSLIENHPMLITTSLADIKSTVEYITSMDFTAIEFRRMVGMCPEILTTQVSDIIPVFTFLHREVHVHGSDIKRVINRRPRLLVCSVSKQLRPTLYFLQSIGIEEVNKHTDLLSCSVEEKFMPRIDCFENIGFSRRDATSMFQRFPPLFCYSIKNNLEPKYSYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKKCVEMGVCFPLPALLKTSEARFQSRLDVCVNSSTPLKTSPLWCAGCDVYDV 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1448 339 Pfam mTERF 157 311 IPR003690 GO:0003690|GO:0006355
Ssu8g1448 339 Pfam mTERF 77 158 IPR003690 GO:0003690|GO:0006355
Ssu8g1448 339 SMART mt_12 166 197 IPR003690 GO:0003690|GO:0006355
Ssu8g1448 339 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Ssu8g1448 339 SMART mt_12 95 125 IPR003690 GO:0003690|GO:0006355
Ssu8g1448 339 SMART mt_12 232 264 IPR003690 GO:0003690|GO:0006355
Ssu8g1448 339 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Ssu8g1448 339 SMART mt_12 198 227 IPR003690 GO:0003690|GO:0006355
Ssu8g1448 339 PANTHER OS03G0360600 PROTEIN 69 324 - -
Ssu8g1448 339 Gene3D Transcription termination factor 3, mitochondrial 142 318 IPR038538 -
Ssu8g1448 339 PANTHER CGI-12 PROTEIN-RELATED 69 324 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu8g1448 mTERF 1.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1448 K15032 - gmx:100804440 644.039