Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1446 ATGGGGAAAGGGAGAGCACCATGCTGTGATAAGACTCAAGTGAAGAGAGGTCCTTGGAGCCCTGCAGAGGACCTTAAGCTCATAGCTTTCATCCAGAAATATGGCCATGAAAACTGGCGCGCTCTCCCCAAACAAGCAGGGCTACTGCGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGGCCTGATGTGAAGAGAGGCAATTTTACACCAGAGGAAGAGGAAACCATAATAAGGCTACATAAGGCCTTGGGTAACAAGTGGTCAAAGATTGCGTCACGTTTGCCCGGTAGGACAGACAATGAGATCAAGAATGTGTGGAACACCCACTTAAAGAAAAGATTGGCTGCCAAAAAAGGTTCAGAATCAAGCGCAGATGAATCCAAGCCAGAATCATCAATAacatcctcctcttcctcttcctctgaATCTTTTTTCTCAAATGAGAGGCCAAATTCACCAAAGACCACAACACCAAGTAATGAATTTAATGACCAAGCAGAGAATTTATCAATGACAGATAAAATTGAGCAGGATTCAGAAAAACAAGTATCCAATGAACTTATTGGTATCACTGAGGATCCAAAAGAGTCATCAGTTTCATTATCTTCTGTTGAGTCAGATATTATGAATTCAAGCCAGATTGTTTCCTACAAACCAGAACAACAATTGGCTTCTCCATTATCCTATCTAGGACCTTATGATGTTGGCAGTATATTAGAGGAGGTGGATAAACCAAACCACCTGATTGAAATACCATGGGAATCAGATTATGATTTTTGGAAGTTGTTAGATGATGATAGCCTGGGATCTTTGCAATCAAATGAAGTCCAATTAGGTGAGTTCCCAACCATCCAAAACAATATTCTTGGAGAAGAGAGTATTCAAGATGCTGAAGCCGGGAAGTGGTCCAATGATTTTGAGAATGAGTTTGGAGTAGTAGGTGAGATAAAGGAGTCAAACAAGGATCATTTCCTACCAAAGAATTATGCAGTTGAGCCAGAAATGGACCACCCTCAGACATTTGATTTCGATGATATGACAAGACCAGAATCTGAATTAGACTTTGGTTATATTCAATTATGGCCCTCTTGGCCACAAAATACTAGTCTTTAG 1125 0.3964 MGKGRAPCCDKTQVKRGPWSPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTPEEEETIIRLHKALGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLAAKKGSESSADESKPESSITSSSSSSSESFFSNERPNSPKTTTPSNEFNDQAENLSMTDKIEQDSEKQVSNELIGITEDPKESSVSLSSVESDIMNSSQIVSYKPEQQLASPLSYLGPYDVGSILEEVDKPNHLIEIPWESDYDFWKLLDDDSLGSLQSNEVQLGEFPTIQNNILGEESIQDAEAGKWSNDFENEFGVVGEIKESNKDHFLPKNYAVEPEMDHPQTFDFDDMTRPESELDFGYIQLWPSWPQNTSL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1446 374 MobiDBLite consensus disorder prediction 130 174 - -
Ssu8g1446 374 Gene3D - 71 143 - -
Ssu8g1446 374 Gene3D - 16 68 - -
Ssu8g1446 374 SMART sant 68 116 IPR001005 -
Ssu8g1446 374 SMART sant 15 65 IPR001005 -
Ssu8g1446 374 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Ssu8g1446 374 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Ssu8g1446 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Ssu8g1446 374 CDD SANT 71 114 IPR001005 -
Ssu8g1446 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Ssu8g1446 374 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Ssu8g1446 374 CDD SANT 18 63 IPR001005 -
Ssu8g1446 374 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Ssu8g1446 374 PANTHER - 1 334 - -
Ssu8g1446 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 334 - -
Ssu8g1446 374 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Ssu8g1446 374 MobiDBLite consensus disorder prediction 117 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1446 Ssu-Chr8 28087384 28089871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1446 1 268 MYB Transcription Factor Family AT1G79180 47.176 2.10e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g1446 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1446 K09422 - gmx:100101836 649.818