Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1445 ATGCAAACTATTCTTATAGAAGGAGAGAAGAGTGGAGGTAAGGAAAAAGTGGTGGGAAAGACAAGTTTGAGGGAGAAGGAGAACAAGGAAAGGGAGGCACAGGTTTTGAAGAGGGAGGCGAGGGTACGATGCGCTAAAAACAAAAACCACTTCAACTTGTGCGCCGCCCAAACCACCAAAACAAACCGTGCCATCGCGCATCCAAACCAAATCCAATCCCTTCGCTATTTCCATTTTCCCCCGTTCCCAGTCCCCACACAACGTTGCTTACAACTTACGACCTACAAATACCCCCTCTCTCTTTCTCGCACGCAAACACTCGCTGTGTTCCTCGCTTCGTTTCGTTCTCTCTCCCCTTTCTCCTCGCGCTCCGGCATCAAGATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTCGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCcagACGTGTAATTCAATTGTTTTCCAAGTGTTTGATGCGTTTCATTTATCTGTTGATGCATTTGACAAACTTGGGTAG 549 0.4809 MQTILIEGEKSGGKEKVVGKTSLREKENKEREAQVLKREARVRCAKNKNHFNLCAAQTTKTNRAIAHPNQIQSLRYFHFPPFPVPTQRCLQLTTYKYPLSLSRTQTLAVFLASFRSLSPFSSRSGIKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQTCNSIVFQVFDAFHLSVDAFDKLG 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1445 182 Coils Coil 23 43 - -
Ssu8g1445 182 ProSiteProfiles Ubiquitin domain profile. 128 158 IPR000626 GO:0005515
Ssu8g1445 182 PANTHER UBIQUITIN 118 160 - -
Ssu8g1445 182 PANTHER - 118 160 - -
Ssu8g1445 182 MobiDBLite consensus disorder prediction 9 29 - -
Ssu8g1445 182 Pfam Ubiquitin family 130 161 IPR000626 GO:0005515
Ssu8g1445 182 Gene3D - 127 167 - -
Ssu8g1445 182 MobiDBLite consensus disorder prediction 1 29 - -
Ssu8g1445 182 SUPERFAMILY Ubiquitin-like 104 160 IPR029071 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1445 128 163 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 88.889 1.03e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1445 - K08770 sspl:121801802 69.707