Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1443 atGAAGCAGCTGATCCGCCGGCTCTCGCGCGTGGCCGACTCCTCGCAGTACACGCTCCTCCGGTCGGACTCCCAGCAGCAGCGCTGCCGGCGCCGCCGCGCGGACTCCTTCCGCTTTGCCGCCGCCGCCAAGATCCGCCGCTCATCCGCGGTGGTGCCGGAAGGGCACGTGCCGATCTACGTCGGCGACGAGATGGAGCGCTTCGTCGTCTGCGCCGAGCTCCTCAACCACCCCGTCTTCGTGAAGCTCCTCAACGAATCGGCGCAGGAATACGGTTACGAGCAGAAAGGGGTGCTCCGGTTGCCGTGCCGCGTCTTCGTCTTCGAGCGCGTGCTCGACGCGCTCCGCCTCGGACACGACGCGCGCGACGTCGCCGAGCTCGTAAATTTCTCGACGGAAGAGTTCTCCTGa 411 0.6715 MKQLIRRLSRVADSSQYTLLRSDSQQQRCRRRRADSFRFAAAAKIRRSSAVVPEGHVPIYVGDEMERFVVCAELLNHPVFVKLLNESAQEYGYEQKGVLRLPCRVFVFERVLDALRLGHDARDVAELVNFSTEEFS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1443 136 Pfam Auxin responsive protein 7 115 IPR003676 GO:0009733
Ssu8g1443 136 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR72 2 133 - -
Ssu8g1443 136 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 2 133 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1443 Ssu-Chr8 27837653 27838063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1443 50 115 Calmodulin-binding Proteins AT2G24400 42.424 3.96e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1443 K14488 - gmx:100793103 228.409