Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1440 ATGGCGGCGCCGAGCAGGATCGAACGCGCTCACCAGATGTACCGTGACGGACGTTACAACGAGGCGTTAGGGTTCTACACGGAGGCAATCGCCATGGCCAAGACCAACCCGCAGAAGATCGCTTTGCATAGCAACCGAGCTGCCTGCTATCTCAAGCTTCACGATTTCAAAAggGCAGCAGAAGAGTGTACCTCAGTGCTTGAGCTTGATCACAAGCACAGTGGGGCATTGATGCTGCGGGCTCAAACACTAGTCACCTTGAAGGAGTACCATTCAGCACTTTTTGATGTCAACAGACTCTTAGAGTTGAATCCTTCTTCAGAGGTTTATCAAAATCTTCAAGCTCGCTTGAAGACACAATTGTCACTTGCTCCAATACCAGAATCAGAAGAGGAGTTTGAAGAACAGGAAGATGAGGAGCCCGAAGTGATACCACAAGGggagaataaaaaagaagagatggGAGAGAAATATTTGCTGACTTCTAATATTAGGACAGATCAAAAGGATGAGCTTGGCAAAGGTATTATTATTGCTGAATGTGCTCCCCATGAAACAGACCCCAAGTTTTCATCCAAGCAAGGAAGAAACCAAAACCATGAGCCTAAGAAGTCCACAGCAGATGCTATAGCCCCTAATGCACCAAACAGGGAATCAACTGAGCAACATTCAAAAGGATGGCAAACAATTCCGAAACCAAAAGGTCATTCAGCTCTAGACTACGCACGGTGGGACAGTGTTGAAGATGATTccagtgatgatgatgatgatgacaatgAAGATGAAGAATCCTTGCCTCAGTACCGATTTCGTGTAAGAACAATTGGTGTCCGTCCTGTAAAGTGA 846 0.435 MAAPSRIERAHQMYRDGRYNEALGFYTEAIAMAKTNPQKIALHSNRAACYLKLHDFKRAAEECTSVLELDHKHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLQARLKTQLSLAPIPESEEEFEEQEDEEPEVIPQGENKKEEMGEKYLLTSNIRTDQKDELGKGIIIAECAPHETDPKFSSKQGRNQNHEPKKSTADAIAPNAPNRESTEQHSKGWQTIPKPKGHSALDYARWDSVEDDSSDDDDDDNEDEESLPQYRFRVRTIGVRPVK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1440 281 MobiDBLite consensus disorder prediction 143 163 - -
Ssu8g1440 281 MobiDBLite consensus disorder prediction 247 263 - -
Ssu8g1440 281 MobiDBLite consensus disorder prediction 127 163 - -
Ssu8g1440 281 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 2 281 - -
Ssu8g1440 281 MobiDBLite consensus disorder prediction 128 142 - -
Ssu8g1440 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 17 94 - -
Ssu8g1440 281 Gene3D Tetratricopeptide repeat domain 2 142 IPR011990 GO:0005515
Ssu8g1440 281 MobiDBLite consensus disorder prediction 212 227 - -
Ssu8g1440 281 MobiDBLite consensus disorder prediction 183 281 - -
Ssu8g1440 281 SUPERFAMILY TPR-like 6 121 IPR011990 GO:0005515
Ssu8g1440 281 MobiDBLite consensus disorder prediction 186 203 - -
Ssu8g1440 281 SMART tpr_5 74 107 IPR019734 GO:0005515
Ssu8g1440 281 SMART tpr_5 40 73 IPR019734 GO:0005515
Ssu8g1440 281 SMART tpr_5 3 36 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1440 2 121 Calmodulin-binding Proteins AT3G25230 32.576 6.90e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1440 - - gmx:100792046 482.256