Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1439 ATGCTTCAGCCAACAtggttattttcttttctagtaTTAACCCTGCAATTATCAGCATCGGGGATCAATTCAGCGACATTCACTTTGGTTAACCGATGCAACTACACAGTGTGGCCAGCTTTATTAAGCAGCGGATCCGGAGTCAACGCGACTCTTTCAACCACCGGCTTCCTTTTGACAACGGGCCAATCTTCTGCCGTCACCGCGCCCGCCACGTGGACCGGCCGCATCTGGGGCCGCACTCTTTGCACCACGGACTCAGCCCTCCAAAATTTCTCTTGTGTCACCGGCGACTGCGGCACCGGCACGGTTGAATGCGGCGGAAGTGGAGGCTCGCCACCAGCGACGCTGGTGGAATTCAGCACAGGCGGCAGTGGCGGGCTTGACTTTTATGATGTCAGCTTGGGGGACGGATTTAACGTCCCCGTGAAGGTGGTTCCCGACGGTGGCAATAATTGCGGTAGCGTACAGTGTTCAGAAGATGTGAATGCGGTGTGTCCGGCAGAGCTGAAGGTGCTGTCGGCAGGTGGCAAAGTGGTGGCGTGCAAAAGTGCTTGCGCTGCATTCAATTCGAGCGAATATTGTGATAAGCCAAATGCGTACTCTCAAATATTCAAGAAGGCCTGCCCGCAAGCCTACAGCTACTCACTTGACGACAATAATACCGTGTTTACCTGTCCAACGCCTGCCGATTACAACGTCGTCTTTTGTCCTGCTGCATCTGAGTTTAATTATAACAACGCCAGTAGTCGAAGTGTTGGAGACTTACTCATTGCTGGCAATGGGACAACTCGGTGGCTTTCTCCTTCAGGTGATTTTGCATTTGGGTTCTACCAACTTCTTGATGAGCTTTTTTTGTTGGCTATATGGTATGACCAGATACCAAATAGGACCATCATTTGGTATGCAAATGGAGACAACCTTGCTCCTGTAGGATCAAAGTTAGAACTAAATGACTCTCATGGACTAGTACTCAGCAACCCTCAAGGTTTAAAGCTATGGAGATCAAATTTTATGTTAGGTACAATTAATAGTGGTCTAATGAATGACGACGGAAATTTCCAACTATTAGACCAAAATTTTGTGTCATTGTGGGAGAGTTTCTCTCATCCAACTGACACATTGGTACCTACTCAAGTAGTGGAGTTAAATGGAGAGCTTTCTTCTCGACAAGGAGAGTTCAACTTCTCACATGGAAGATTCAAACTTCATCTACAAGAGGATGGGAATGTTGTCCTCAACCTTATAAATTTGCTTAGCAACTACAGTTATGAGCCTTACTATGATACTGGCATTGTTGATGCAAAAAACCAAACAAATGATGGCATGAAATTGATATTTGACAAATTAGGCTTCTTATACATATTGACAAAAAGTGGGGAGAAGTTTAATATCACCAAGCCAAATGAGATGGTCTCGACAAATGGCATCTACTACAAAGCAACAATCAATTATGATGGAGTTTTTACTATATCATATTACCCAAAAGATCCAAAAAATGGACAAAGATGGGTCACTACGAAGACTATAccagaaaatatttgtttgaattctaCATTCACAAATGGTGAAGGTGTTTGTGGGTTTAATAGCTTATGCAACCTCAAAGACGACCAAAGGCCAATGTGTAATTGCCCAGAGGGATATtctttaattgattcaaataaCATGTATGGTGGCTGCATACCAAATTTCCAAGTTGTTTGTCAAGGAGGTGAGAGGCTAGGTTCACAAGATGATTACATAATGAAGGAATTGCAAAACACTGATTGGCCTAAATCTGATTATGAAACATTAAGTCCTTGTAGTCTAAAGGAATGCACAGAATCTTGCTTGCAAGATTGCTTATGTGTATTGGTTACTTTTAATGGAAGTTCTTGTTGGAAGAAGAAGTTGCCACTCACAAATGGGAGAAGAGATCAAGGAGTAAATGGAACTTCTATcataaaattgatgaaaaataaccATTTCACATCTTTCTCAAATCCACATGATAAGAAAGATCATGATGCTTTAATTGTTGTGATATCAGTTCTTTTAGGCAGCTCTGTGTTAGTCATTTTAATGTTGGTTGGTGCAATATGTTTTGGTTTCTCTTGCAACCGCAAGAAGATGAAGGGTAGTATAACCAATAAAAGTGTTGTTgataaaaaattgcataattttacCTTCAAGGAACTTGTAGAAGCAACAAGCAACTTTAGAGAAGAATTGGGAAGGGGGTCTTTTAGCATTGTCTACAAAGGAACAATAGAGATGACTAGTGTGGCTGTTAAGAAATTAGACAAGTTGTTCCAAGATAATGATAAGGAATTTCATACTGAAGTGAATGTCATAGGCCAAACTCATCATAGAAACCTAGTTCGTCTACTTGGATATTGTAATGAAGGACAACATCGAATTCTGGTATACGAGTTTATGAGCAATGGCACTTTAGCAAGCTTCCTTTTCACCCCTTTGAAATCAAATTGGGGCCAACGATTCCACATTGCCCTTGGGATTGCAAGAGGTCTTGTTTACTTGCATGGGGAATGTTGCACCCAAATCATCCATTGTGACATAAAGCCACAAAATATACTTCTTGATGATCAATATAATgccaaaatttcagattttgggTTAGCAAAGCTATTGTTGATCAATCAAAGCCACACTGAAACTGGAATTAGAGGAACAAAAGGGTATGTTGCACCAGATTGGTTTAGAAGTGCACCAATCACTGTCAAGGTTGACACTTATAGTTTTGGTGTGTTGTTACTAGAGATCATTTGTTGTAGGAGAAATGTAGAAAAGGAGCTTGTTAATGAAGAAAGAGGGATATTAACTGATTGGGCATATGATTGCTACAAGACTAAAAGACTAGacattcttttagaaaatgatgagGAAGCTATTAATGACATTAAGAGCTTTGAAAAACTTGTGATGGTTGCTATTTGGTGCATTCATGAAGATCCATCTCTGAGGCCAACAATGAAGAAGGTTTTGTTGATGCTAGAAGGAATTGTTGAAGTTTCAACACCCCCAAGTCCCTACCTTTGTAgttctattagttga 3057 0.3945 MLQPTWLFSFLVLTLQLSASGINSATFTLVNRCNYTVWPALLSSGSGVNATLSTTGFLLTTGQSSAVTAPATWTGRIWGRTLCTTDSALQNFSCVTGDCGTGTVECGGSGGSPPATLVEFSTGGSGGLDFYDVSLGDGFNVPVKVVPDGGNNCGSVQCSEDVNAVCPAELKVLSAGGKVVACKSACAAFNSSEYCDKPNAYSQIFKKACPQAYSYSLDDNNTVFTCPTPADYNVVFCPAASEFNYNNASSRSVGDLLIAGNGTTRWLSPSGDFAFGFYQLLDELFLLAIWYDQIPNRTIIWYANGDNLAPVGSKLELNDSHGLVLSNPQGLKLWRSNFMLGTINSGLMNDDGNFQLLDQNFVSLWESFSHPTDTLVPTQVVELNGELSSRQGEFNFSHGRFKLHLQEDGNVVLNLINLLSNYSYEPYYDTGIVDAKNQTNDGMKLIFDKLGFLYILTKSGEKFNITKPNEMVSTNGIYYKATINYDGVFTISYYPKDPKNGQRWVTTKTIPENICLNSTFTNGEGVCGFNSLCNLKDDQRPMCNCPEGYSLIDSNNMYGGCIPNFQVVCQGGERLGSQDDYIMKELQNTDWPKSDYETLSPCSLKECTESCLQDCLCVLVTFNGSSCWKKKLPLTNGRRDQGVNGTSIIKLMKNNHFTSFSNPHDKKDHDALIVVISVLLGSSVLVILMLVGAICFGFSCNRKKMKGSITNKSVVDKKLHNFTFKELVEATSNFREELGRGSFSIVYKGTIEMTSVAVKKLDKLFQDNDKEFHTEVNVIGQTHHRNLVRLLGYCNEGQHRILVYEFMSNGTLASFLFTPLKSNWGQRFHIALGIARGLVYLHGECCTQIIHCDIKPQNILLDDQYNAKISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSAPITVKVDTYSFGVLLLEIICCRRNVEKELVNEERGILTDWAYDCYKTKRLDILLENDEEAINDIKSFEKLVMVAIWCIHEDPSLRPTMKKVLLMLEGIVEVSTPPSPYLCSSIS 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1439 1018 CDD TLP-PA 26 237 - -
Ssu8g1439 1018 SMART serkin_6 732 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1439 1018 ProSiteProfiles Bulb-type lectin domain profile. 248 369 IPR001480 -
Ssu8g1439 1018 SUPERFAMILY Protein kinase-like (PK-like) 715 1000 IPR011009 -
Ssu8g1439 1018 ProSiteProfiles Thaumatin family profile. 24 238 IPR001938 -
Ssu8g1439 1018 PRINTS Pathogenesis-related protein signature 129 145 IPR001938 -
Ssu8g1439 1018 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Ssu8g1439 1018 PRINTS Pathogenesis-related protein signature 228 237 IPR001938 -
Ssu8g1439 1018 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Ssu8g1439 1018 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 172 1018 - -
Ssu8g1439 1018 SMART tha2 27 238 IPR001938 -
Ssu8g1439 1018 Gene3D Thaumatin 25 238 IPR037176 -
Ssu8g1439 1018 ProSiteProfiles Protein kinase domain profile. 732 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1439 1018 Pfam D-mannose binding lectin 298 385 IPR001480 -
Ssu8g1439 1018 SMART blect_4 256 371 IPR001480 -
Ssu8g1439 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 849 861 IPR008271 GO:0004672|GO:0006468
Ssu8g1439 1018 Gene3D Transferase(Phosphotransferase) domain 1 807 1008 - -
Ssu8g1439 1018 CDD STKc_IRAK 738 1002 - -
Ssu8g1439 1018 Gene3D - 260 370 IPR036426 -
Ssu8g1439 1018 ProSitePatterns Protein kinases ATP-binding region signature. 738 760 IPR017441 GO:0005524
Ssu8g1439 1018 SUPERFAMILY Osmotin, thaumatin-like protein 25 238 IPR037176 -
Ssu8g1439 1018 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 172 1018 - -
Ssu8g1439 1018 Pfam Thaumatin family 31 238 IPR001938 -
Ssu8g1439 1018 Gene3D Phosphorylase Kinase; domain 1 695 806 - -
Ssu8g1439 1018 Gene3D - 371 510 IPR036426 -
Ssu8g1439 1018 SUPERFAMILY alpha-D-mannose-specific plant lectins 285 430 IPR036426 -
Ssu8g1439 1018 Pfam Protein kinase domain 735 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1439 Ssu-Chr8 27653783 27661535 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1439 719 1001 Receptor kinase-like Gene Family AT1G60800 42.268 5.51e-66 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu8g1439 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1439 - - gmx:100796619 1584.31