Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1438 ATGGCTCAGCCAACATGGTTGTTTTCACTTTTAGCATTAACACTTCAATTATCAGCATCagGGGTCAATTCGGCGACACTCACTTTAGCTAACCAATGCAATTACACAGTGTGGCCAGCATTAGCCGGCAATGGAGACGCGGCCCTTTCAACCACCGGATTCATTTTGAGAACCGGCGAATCTTCCAACGTCACCATACCCGCCACGTGGTCCGGCAACATTTGGGGCCGCACTCTCTGCACCCCCAACTCAGCCCCCGGGAGTTTCTCTTGCGTCACTGGCAATTGTGGCACTGGCAAGGTGGAATGCGGCGGAATGGGAGACTCGCCGCCGGCCACACAGGTGGGGTTCAACACGAGTAGCAATAGCAGGCTTGACTTCTATGGCGTCAGTTTGGCGGACGGGTTTAACATCCCCATGACGGTGGTTCCCGTCGGCGGCAATTGCAGCAGCGCGGGGTGTCCGGAAAATTTGAACGCGATGTGTCCGGCGGAGCTGAATGTGACGGAAAAGGGCCAAGTGGTGGCGTGCCGGGCTGCTTGTTTTGCTTCCAATAGTTCTACTTGCGAGCCAAATGAGTACTCCCGAAAATTCAAGAGGGCCTGCCCGCAAGCCTACACCGGCACACACGACGAAAAAGCCAGCCTGTTTTCGTGTTCAACAGCTACAGATTACAACGTTGTCTTTTGTCCTGCTGCTTCCAAGGCTAACAGCGCCagcCGAAGTGTTGGTGACTCACTCATTGCTGGCAATAGGACATCTCAATGGCTTTCTCCTTCAGGTGATTTTGCATTTGGGTTCTACCAACTTCCAAATGAGCTTTTCCTGTTGGCTATATGGTATAACAAGATACCAAATAGGACTATCATTTGGTATGCAAACGGAGATAACCTTGCTCCTGTAGGATCAAGTTTAAGACTAAATGACTCTCGTGGACTAGTACTCAGTAACCCTCAAGGTTTAGAGTTATGGAGATCAAATTTTATGTCAGGTACAATTTATAGTGGTTTAATGAACGATGATGGACAATTCCAATTGTTAGACCGAAATTTTGTGTCATTATGGGATAGTTTCACTCATCCAACTGACACGTTGGTACCTACTCAAGTAATGGAGTTAAATGGAGAACTTTCTTCCAGACAAGGAGAGTTCAACTTCTCACGTGGAAGGTTCAAACTTCATTTACAAGAGGACGGCAATCTTGTGCTCAACCGTGTAAATTTGCTTGGCAACTATAATTATAAGCCTTATTATGATACTGGCACTGCTGATGCTAAGAACATAACAAATGTTGGcatgaaattgatatttaatgaaTCAGGTTTCTtatacattttgaaaaaaagtggGGAAAAGTTTAGTATCTATAAGCCAAATGAGATGGTGTCTACTAATGCCTTCTACAAAGCAACGATCAATTTTGACGGAGTTTTCACCATATCTTATTACCCAAAAGATCCAAAAGATGGACAAAGATGGGTCACTACTAAGGCTATAccagaaaatatttgtttgaattctaCATTCCCAATTGGTGAAGGTGTTTGTGGGTTTAATAGCATATGCAACCTCAAAGATGACCAAAGGCCAATGTGTAACTGCGTAGAAGGATATTCTCTAATTAATTCAAGTAACATGTATGGTGCCTGCATACGAAACTCCTTAAACCCAAATGAGAAGAAAGATTATAAGAAGAAAGATCATGATGCCTTGATTGTTGTGACATCAGTTCTTTTAGGCAACTCTGTGTTGGTCAACATAATGTTGGTTAGTGCAATATGTTTTGGTTTCTCCTGCAACCGCAAGAAGATCAAAAGTAGTAGAACCAACAATAATGTTGTTTAccaaaatttgcataatttCACCTTCAAGGAACTTGTAGAAGCAACAAGTAACTTTACAGAAGAATTAGGAAGGGGATCTTTTAGCATTGTCTACAAAGGAACAATGAAGATGACTAGTGTGGCTGTTAAGAAATTAGACAAGTTATTCCAAGATAATGATAAGGAATTTCAGACTGAAGTGAATGTAATAGGCCAAACTCATAACAGGAACCTAGTTCGTCTACTTGGATATTGTAATGAAGGACAACATCGAATTCTGGTATATGAGTTTATGAGCAATGGCACTTTAGCAAGCTTCCTTTTCACCCCTTTGAAATCAAATTGGGGCCAATGA 2178 0.4174 MAQPTWLFSLLALTLQLSASGVNSATLTLANQCNYTVWPALAGNGDAALSTTGFILRTGESSNVTIPATWSGNIWGRTLCTPNSAPGSFSCVTGNCGTGKVECGGMGDSPPATQVGFNTSSNSRLDFYGVSLADGFNIPMTVVPVGGNCSSAGCPENLNAMCPAELNVTEKGQVVACRAACFASNSSTCEPNEYSRKFKRACPQAYTGTHDEKASLFSCSTATDYNVVFCPAASKANSASRSVGDSLIAGNRTSQWLSPSGDFAFGFYQLPNELFLLAIWYNKIPNRTIIWYANGDNLAPVGSSLRLNDSRGLVLSNPQGLELWRSNFMSGTIYSGLMNDDGQFQLLDRNFVSLWDSFTHPTDTLVPTQVMELNGELSSRQGEFNFSRGRFKLHLQEDGNLVLNRVNLLGNYNYKPYYDTGTADAKNITNVGMKLIFNESGFLYILKKSGEKFSIYKPNEMVSTNAFYKATINFDGVFTISYYPKDPKDGQRWVTTKAIPENICLNSTFPIGEGVCGFNSICNLKDDQRPMCNCVEGYSLINSSNMYGACIRNSLNPNEKKDYKKKDHDALIVVTSVLLGNSVLVNIMLVSAICFGFSCNRKKIKSSRTNNNVVYQNLHNFTFKELVEATSNFTEELGRGSFSIVYKGTMKMTSVAVKKLDKLFQDNDKEFQTEVNVIGQTHNRNLVRLLGYCNEGQHRILVYEFMSNGTLASFLFTPLKSNWGQ 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1438 725 SUPERFAMILY Protein kinase-like (PK-like) 607 719 IPR011009 -
Ssu8g1438 725 SUPERFAMILY Osmotin, thaumatin-like protein 25 231 IPR037176 -
Ssu8g1438 725 SMART tha2 27 231 IPR001938 -
Ssu8g1438 725 Gene3D Phosphorylase Kinase; domain 1 594 705 - -
Ssu8g1438 725 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 559 725 - -
Ssu8g1438 725 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 154 553 - -
Ssu8g1438 725 Gene3D - 241 361 IPR036426 -
Ssu8g1438 725 Gene3D - 362 499 IPR036426 -
Ssu8g1438 725 ProSiteProfiles Bulb-type lectin domain profile. 232 359 IPR001480 -
Ssu8g1438 725 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 559 725 - -
Ssu8g1438 725 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 154 553 - -
Ssu8g1438 725 Gene3D Thaumatin 25 231 IPR037176 -
Ssu8g1438 725 SUPERFAMILY alpha-D-mannose-specific plant lectins 275 422 IPR036426 -
Ssu8g1438 725 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Ssu8g1438 725 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Ssu8g1438 725 PRINTS Pathogenesis-related protein signature 221 230 IPR001938 -
Ssu8g1438 725 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Ssu8g1438 725 ProSitePatterns Protein kinases ATP-binding region signature. 637 659 IPR017441 GO:0005524
Ssu8g1438 725 ProSiteProfiles Thaumatin family profile. 24 231 IPR001938 -
Ssu8g1438 725 Pfam Thaumatin family 31 231 IPR001938 -
Ssu8g1438 725 SMART blect_4 245 361 IPR001480 -
Ssu8g1438 725 ProSiteProfiles Protein kinase domain profile. 631 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1438 725 Pfam D-mannose binding lectin 288 375 IPR001480 -
Ssu8g1438 725 Pfam Protein tyrosine and serine/threonine kinase 633 716 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1438 Ssu-Chr8 27617486 27629800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1438 618 715 Receptor kinase-like Gene Family AT5G38280 38.000 2.34e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu8g1438 Thaumatin 1.6e-55 CL0293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1438 - - gsj:114387079 1034.25