Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1416 ATGAACGGAGCAGAGATTTCAATATCTGATCCTATTGTCTCCTTCCGCGAGACTCTGTTTGAGAGGTCTTGCCGTACAGTGATGAGCAAGTCACCTAACAGACACAACCGGCTGTACATGGAAGGAAGGCCAATGGAGGCTGGACTCGCGGAGGCCATTGATGATCAAAAGATTGGACCAGGGGTTGACCCCAAAAGTCGGTCTAAGATATTGTCAGAAGAGTTTGGCTGGGACAAGGATCTGGCCAAGAAGATATGGTGTTTTGGCCCTGAGGGTAAAGGACCCAACATGGTGGTAGATACTTGCAGGGGTGTACAGCACCTCAACGAAATCAAAGACTCGGTTGTTGCTGGGTTTGAGTTGGCAGCGAAAGAAGGTCCAATGGCTGATGAGAACATGCGAGGGGTCTGCTTTGAGATTTGTGATGTCGTTCTTCATGCAGATGCCATCCACAGAGGAGGCGGCCAGATCATTCCAACTGCTAGAAGGGTCTTCTATGCAGCCATGCTGACGGCAAAACCAAGACTTCTTGAGCCTGTGTATCTGGTGGAGAAACAAGCACCTGAACAGGCTCTTGGTGGTATATACAGTGTTCTTAACCAGAAAAGAGGGCATGTGTTTGAGGAAATCCAGAGGCCTGGCACCCCACTTTACAATGTCAAGGCATATTTGCCTGTTATTGAGTCATTTAGATTCAATGAATCACTAAGGGCTCAAACTGGAGGACAGGCTTTCCCACAGTTGGTGTTTGACCACTGGGATATGGTGCCATCTGATCCACTGGAACCTGGCACTCCTGCTGCTGCACGTGTGGCGGAGATAAGAAGGAAGAAAGGCTTGAAGGAACAAATAATGCCTCTTGCTGAGTTTGAGGACAGGCTTTGA 885 0.4881 MNGAEISISDPIVSFRETLFERSCRTVMSKSPNRHNRLYMEGRPMEAGLAEAIDDQKIGPGVDPKSRSKILSEEFGWDKDLAKKIWCFGPEGKGPNMVVDTCRGVQHLNEIKDSVVAGFELAAKEGPMADENMRGVCFEICDVVLHADAIHRGGGQIIPTARRVFYAAMLTAKPRLLEPVYLVEKQAPEQALGGIYSVLNQKRGHVFEEIQRPGTPLYNVKAYLPVIESFRFNESLRAQTGGQAFPQLVFDHWDMVPSDPLEPGTPAAARVAEIRRKKGLKEQIMPLAEFEDRL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1416 294 Gene3D - 174 294 - -
Ssu8g1416 294 CDD eEF2_snRNP_like_C 178 257 - -
Ssu8g1416 294 CDD aeEF2_snRNP_like_IV 10 182 - -
Ssu8g1416 294 Pfam Elongation factor G, domain IV 64 173 IPR005517 GO:0005525
Ssu8g1416 294 SMART EFG_C_a 175 264 IPR000640 -
Ssu8g1416 294 Gene3D - 21 173 IPR014721 -
Ssu8g1416 294 Pfam Elongation factor G C-terminus 175 261 IPR000640 -
Ssu8g1416 294 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 293 - -
Ssu8g1416 294 SMART EFG_IV_2 56 173 IPR005517 GO:0005525
Ssu8g1416 294 PANTHER TRANSLATION ELONGATION FACTOR EF-2 SUBUNIT 1 293 - -
Ssu8g1416 294 SUPERFAMILY EF-G C-terminal domain-like 178 275 IPR035647 -
Ssu8g1416 294 SUPERFAMILY Ribosomal protein S5 domain 2-like 13 177 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1416 Ssu-Chr8 27184375 27185259 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1416 1 294 Eukaryotic Initiation Factors Gene Family AT1G56070 78.231 2.99e-172 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1416 K03234 - tcc:18594569 503.056