Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1398 ATGAGAGAAACTGGGCTGAGttctaaaaaaattgggaaCAACAATGGGTCTTTGTCAGTGGAAGCATGCCAGTTGGCTCTAATAACTCGTTGGGCAGGTGATCATCATatcaatttttggaaacaaaGGATTGATAAAGTCCTCCTTAATCTTCTGATTGAAAATATTCAAGACCAATTGTCTGAACCTGTCTTGTCATTGGAAAAACAAATATCCACGGCGAAAGAGGGATTAAAAGCCAATTATAATCTTGGCGTTAGGAGTTATCTGTGGGACATTCTTGGGTGGCTTATAATTCATTGTGGAGAAAATTTAAACCCTTATACTCATGGAAGTGAGCTCTGCATCAACTTACTAATTACATGTGCATGCTTGAGTTTTGTGGATACACTTGAAAAATGGTGCCGAATATGTCAAAAGGATATTGATGATCATTTTCAAAGTGAACCAGTATCAAGGGCTGTTCTAATGATGATTCATTCTCCATGTAATTCCGTCTCCTCATATACTAGATTCTTATTATCAGATGTACTGAAGGTGAAAGGCATGCCATGTTTGAAAAGCTCAATACATACTCTAGATTATACATCATCTCTAGAAAGCTATGGATCATTTGATAAACTTCAACtggttattaatttaattgggtTAACTTGTCTTTCAAGTTTACCACAGTATCAAAGATTTATCGTTGAGAGCAAAGCGATAAAGGCTGTTGTTCTTCTTGTGAAACGATGCTTAAGTAATGACATTCATGTAGAAAGGCACAGCTTTGCTCCTCATTTGCATACAACATGGCATGAAAGGTCTTGTTGCTGTTTTGATAAAGAAGATTGGGAAGGTTCCAatgttctcttattttatagTTTGTTGGGCTTAACTGAAATTCTTCATCAGTGTGACCTACAAGATAATCCTGAACAATTTTCTAGAGAGCTCACAAACATTAGAGCTCAGTTAGTTAGCAAACTTCATGAGATCTGTAGTAGCAACTCTTTCAGTCCTGGAGTGAGATGGTATGTTTCTTATATTCTAActtattttggattttatggTTTCCCAAATGAATTAGCCAAAAGGATTGGGAAATCTCTCAATAACGAAGAATACTCAGATATGAAGCTCATTGTAGCAAATGGGGATTCTGTGAGTGTTCATGTTGTTATTCTTGCTGTTCGATGTCCATCACTTCTGCCTCCTCAATTGTTACCTAGTAGGAAGAGTTCTGAAGAGGTAACAGATAAGTTTGTTGCACAGACCATGAGAGAAGTTCGATTATCTTCTCATGTTGATTATGAAGCATTGGTGGTGTTGTTGGAATATGTATACTCAGGATGCTTACATGCAGGAGAAGAAACAGTAAAGAAGCTGAAAATTCTTGCTAAGCGCTGCAATCTACAGCCTCTCTTACAAATGCTTTATAGACAACGTCCAAAGTGGGGCACACCTTTCCCCAGCTATAATCTTACTTCATCTCTTGGTTCAGCTGGAAGTTGTTTTTCGGATGTCATATTGgaaactaaatcaaataaaCTTGTTGGGTGGATATGCAATATTTGTTCTGACACAGTACCCCATATGCATGTTCACAAAGTTATATTGCAGTCTGGTTGTGATTATTTACAAGGTTTGTTCCGGTCAGGAATGCAAGAAAGTCAGTCACAAGTCATAAAAGTTGATATTAGCTGGGAAGCATTGATTAAACTAGTACAGTGGTTTTATTCTGATGAGCTGCCTAATCCTCCCTCTGGATGCTTGTGGGATAATATGGATGACGAAGAAAAGCTATTTAATCTACAACCATATGTGGAGCTTTGTTGGCTTGCTGAGTTCTGGATTTTGGAAAATATTCAGGAAGCCTGCTGGAATGTGATTATGTCTTGTCTTAATTCTTCCAGGCAGTTGTCcgttaaaataatcaaaatggcTTATAATCTCTCTTTGTGGAAGTTGGTTGACATTGCAGCAAATCTCATGGCTCCTTCATATCGTCAATTACGAGATTCTGGTGAACTTGAAGAATTTGATGATGCGCTAGTGCACTTAATTTATTCTGCTTCTATTCAACTTAACCAAGAAGGCAAAAATTGCTTTAGGTTATTTAATATTCTTCAAGATGATTCATAG 2127 0.3559 MRETGLSSKKIGNNNGSLSVEACQLALITRWAGDHHINFWKQRIDKVLLNLLIENIQDQLSEPVLSLEKQISTAKEGLKANYNLGVRSYLWDILGWLIIHCGENLNPYTHGSELCINLLITCACLSFVDTLEKWCRICQKDIDDHFQSEPVSRAVLMMIHSPCNSVSSYTRFLLSDVLKVKGMPCLKSSIHTLDYTSSLESYGSFDKLQLVINLIGLTCLSSLPQYQRFIVESKAIKAVVLLVKRCLSNDIHVERHSFAPHLHTTWHERSCCCFDKEDWEGSNVLLFYSLLGLTEILHQCDLQDNPEQFSRELTNIRAQLVSKLHEICSSNSFSPGVRWYVSYILTYFGFYGFPNELAKRIGKSLNNEEYSDMKLIVANGDSVSVHVVILAVRCPSLLPPQLLPSRKSSEEVTDKFVAQTMREVRLSSHVDYEALVVLLEYVYSGCLHAGEETVKKLKILAKRCNLQPLLQMLYRQRPKWGTPFPSYNLTSSLGSAGSCFSDVILETKSNKLVGWICNICSDTVPHMHVHKVILQSGCDYLQGLFRSGMQESQSQVIKVDISWEALIKLVQWFYSDELPNPPSGCLWDNMDDEEKLFNLQPYVELCWLAEFWILENIQEACWNVIMSCLNSSRQLSVKIIKMAYNLSLWKLVDIAANLMAPSYRQLRDSGELEEFDDALVHLIYSASIQLNQEGKNCFRLFNILQDDS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1398 708 Gene3D Potassium Channel Kv1.1; Chain A 353 476 IPR011333 -
Ssu8g1398 708 Gene3D Potassium Channel Kv1.1; Chain A 496 669 IPR011333 -
Ssu8g1398 708 SUPERFAMILY POZ domain 349 472 IPR011333 -
Ssu8g1398 708 ProSiteProfiles BTB domain profile. 371 451 IPR000210 GO:0005515
Ssu8g1398 708 CDD BTB_POZ_ZBTB_KLHL-like 500 578 - -
Ssu8g1398 708 SUPERFAMILY POZ domain 526 626 IPR011333 -
Ssu8g1398 708 PANTHER OS06G0674800 PROTEIN 1 694 IPR044953 -
Ssu8g1398 708 ProSiteProfiles BTB domain profile. 501 582 IPR000210 GO:0005515
Ssu8g1398 708 SMART BTB_4 514 629 IPR000210 GO:0005515
Ssu8g1398 708 SMART BTB_4 371 481 IPR000210 GO:0005515
Ssu8g1398 708 Pfam BTB/POZ domain 526 591 IPR000210 GO:0005515
Ssu8g1398 708 Pfam BTB/POZ domain 363 471 IPR000210 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu8g1398 BTB 2.9e-07 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1398 - - gsj:114385670 1296.57