Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1385 ATGGCTTCCGCGAGGGTAAGCCCCGAGACGGTAACCAAAGCCGTCGACGCTCTCCTAAAGTGGCGCCGCTCCCAATCCGAAACCCAAAAGCCGAAACTCTTCGACGAAGACGAGGAATTCGTGTACCTCGTCCTCACGCTGAAGAAGATCCCTGCCAAGTCCCGCGTGAACCCTTACAAGATCCCTCTCCCGCACTCCCTCCTCTCCCCGTTCTCCGAGCAGTGCCTCATCCTCGACGACCGGCCCAACAGGGCCCGCGTGACGAAGGCCCAGGCCCAGGCCAAGATCCAGGCCGAGTCCGTCCCCGTCGCGAAGGTCCTCAGGCTCTCGAAGCTCGCCTCCGACTACCGCGCCTTCGAGGCGAAGCGCAAGCTCTGCGACTCCTACGACCTCTTCTTCGCCGAGAAGAGCGTCGTGCCGCTGCTGCCGCGGCTCCTCGGGAAGCGCTTCTTCAAGAAGCGGAAGGTGCCGGTGCCGGTGGATCTCAAGAAGAACAACTGGAGGGAGCAGGTGGAGAGGGCGTGCGCCTCCGCGATGCTGTTCGTGCGGACCGGCACGTGCAGCGTGGTTAAGGTTGCGAAGGCGAGGATGGAGAGCGGCGAGATTGTGGAGAACGTGGTGGCCGCGATCGAGGGGATCGTGGAGGTTGTGCCGAAGAAGTGGGGGAATGTGAGGTCGTTGCATGTGAAGTTGCTGGAGAGTGTGGCCTTGCCGGTGTATCAGGCGGTTCCGGATGTGAAATTGAAGATTGAAGGAGTTAGGGTTGAGGACGAGACGCCGGAGAAAGAAAAcaaggaggaggagaaggatAGTGAGATTCGCAATtcggagaagaagaagaagaagaagagggggAGAATTCATGAAGTTAGGTATATGGATGATAATGTCGAAAATGAGTTGGCGAGTGAtgataatgatggtggtggtgacgacaataGTGATAATGAAATGATGaacaagaagaggaagaagaaggttTCGAGTGAGTTGAGTGGTGTTAAGCGAGTGAAGAAATTGGCTAGTGctaaggagaagaagaagaagggctTGTCTGGCGCGAAGGCGGCTAAGGAAGGTTTGGTTGGGGGAAGTGGAAGTGAATTGGTTGTTAAGGATGAGGAGTCGGgggtgaagaagaagaagagaggggATGTGAAGGCGAAGGCTGAGAAGAGTGTGAAGGCTAAGAGAAGTAAGAAGGCTGCGTGA 1212 0.5025 MASARVSPETVTKAVDALLKWRRSQSETQKPKLFDEDEEFVYLVLTLKKIPAKSRVNPYKIPLPHSLLSPFSEQCLILDDRPNRARVTKAQAQAKIQAESVPVAKVLRLSKLASDYRAFEAKRKLCDSYDLFFAEKSVVPLLPRLLGKRFFKKRKVPVPVDLKKNNWREQVERACASAMLFVRTGTCSVVKVAKARMESGEIVENVVAAIEGIVEVVPKKWGNVRSLHVKLLESVALPVYQAVPDVKLKIEGVRVEDETPEKENKEEEKDSEIRNSEKKKKKKRGRIHEVRYMDDNVENELASDDNDGGGDDNSDNEMMNKKRKKKVSSELSGVKRVKKLASAKEKKKKGLSGAKAAKEGLVGGSGSELVVKDEESGVKKKKRGDVKAKAEKSVKAKRSKKAA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1385 403 Coils Coil 262 282 - -
Ssu8g1385 403 CDD Ribosomal_L1 11 239 IPR028364 -
Ssu8g1385 403 SUPERFAMILY Ribosomal protein L1 6 240 IPR023674 -
Ssu8g1385 403 MobiDBLite consensus disorder prediction 314 339 - -
Ssu8g1385 403 PANTHER RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1 3 305 - -
Ssu8g1385 403 Gene3D - 85 177 IPR016095 -
Ssu8g1385 403 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 3 305 - -
Ssu8g1385 403 MobiDBLite consensus disorder prediction 256 403 - -
Ssu8g1385 403 Pfam Ribosomal protein L1p/L10e family 32 235 IPR028364 -
Ssu8g1385 403 MobiDBLite consensus disorder prediction 256 277 - -
Ssu8g1385 403 MobiDBLite consensus disorder prediction 372 392 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1385 128 230 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 31.068 6.62e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1385 K14775 - gmx:100782862 498.434