Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1379 ATGACTTGTTTTCCTTCATTATTCAGTAAGTCGTCTTCTTCAGCAAGACATGACGATCCAGAAATTGGTGAAGGCATTCATAATGTTAAAATCTACACCTACAAACAACTAAGAAATGCAACTGAAGATTTTAGTCCAGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACGGCTTAAAGATGGAAAAGTTGCCGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTGAAGGAGTTCTTGACAGAGATTAATGTGATCTCAGAGATAGAGCATGAAAATTTGGTCAAGTTATATGGTTGTTGTGTGGAAAAAAATAACAGAATATTAGTCTACAACTACCTTGAGAATAACAGCCTATCACAAACTCTTCTAggTGGACGTCACAGTAGTATCTACTTTGATTGGCGAACACGATGTAAAATATGCGTTGGGGTTGCACGTGGGCTTACCTTCCTTCATGAAGAAGTAAGGCCTCATATTGTTCATAGGGATATAAAAGCAAGCAATATCCTCCTTGACAAAGATCTTACGCCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTCAGCACACGTGTAGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAGGGGGGAAGCTAACACGGAAAGCAGACATTTACAGCTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGAAGATGTAACACAAACTCACGACTACCTATAGAAGAACAATTTCTTCTAGAGAGGACATGGGAACTTTATGAGCGAAAGGAATTGGTCGGACTGGTAGACACATCATTAAACGGGGAATTCGATGCTGAGCAGGCTTGTAAGTTTCTGAAGATTGGCCTTATTTGCACTCAGGAAGCGCCAAAGCTCCGGCCATCCATGTCTTCTGTGGTCAAGATGCTCACTGGAAAAATGGATGTTGATGACAGTAAGATAACAAAACCTGCCTTAATTACTGATTTTATGGACCTCAAAGTTAGAAGGAACGAAGAAAGTAGTACTGATATGAAGAATTCATCTATAGACAATACTTCCTCTTCCTTTGACAACCATGATACCACCATGTCATTCGCCACAACTTCAACCTTCACTCCAAAATATGATCAAAGCAtgtaa 1158 0.3998 MTCFPSLFSKSSSSARHDDPEIGEGIHNVKIYTYKQLRNATEDFSPANKIGEGGFGSVYKGRLKDGKVAAIKVLSAESRQGVKEFLTEINVISEIEHENLVKLYGCCVEKNNRILVYNYLENNSLSQTLLGGRHSSIYFDWRTRCKICVGVARGLTFLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADIYSFGVLLVEIVSGRCNTNSRLPIEEQFLLERTWELYERKELVGLVDTSLNGEFDAEQACKFLKIGLICTQEAPKLRPSMSSVVKMLTGKMDVDDSKITKPALITDFMDLKVRRNEESSTDMKNSSIDNTSSSFDNHDTTMSFATTSTFTPKYDQSM 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1379 385 Gene3D Transferase(Phosphotransferase) domain 1 120 331 - -
Ssu8g1379 385 CDD STKc_IRAK 50 317 - -
Ssu8g1379 385 Pfam Protein kinase domain 47 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1379 385 PANTHER - 2 375 - -
Ssu8g1379 385 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Ssu8g1379 385 MobiDBLite consensus disorder prediction 1 21 - -
Ssu8g1379 385 Gene3D Phosphorylase Kinase; domain 1 14 119 - -
Ssu8g1379 385 SUPERFAMILY Protein kinase-like (PK-like) 24 316 IPR011009 -
Ssu8g1379 385 SMART serkin_6 44 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1379 385 ProSiteProfiles Protein kinase domain profile. 44 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1379 385 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 375 - -
Ssu8g1379 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1379 Ssu-Chr8 26378799 26391314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1379 18 379 Receptor kinase-like Gene Family AT1G56120 50.276 2.16e-112 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g1379 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1379 - - gmx:100782320 680.248