Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1372 ATGATGGCATTGGGGTGCAGTTTCCACTTCCTAAATGGGGTTTACATGGTGCTATTGTTTTGCCTTGGCATTGTCCTTGTGAATTCGGTTAATGAAGAGGGCTTGAGTCTTTTGAGGTTCAAAGCTTCCCTTGACCCAAACAACAACCTTTATAACTGGAATTCTTCTGATTTGACTCCTTGCAATTGGACTGGTGTGTATTGCACAGGTTCAGTGGTAACTTCTGTGAAACTTTACCAACTTAATCTGTCAGGTACTTTGGTTCCTACCATCTGTAATCTTCCAAAGCTGCTTGAGTtgaatttgtcaaaaaatttcatctcTGGCCCCATTCCTGATGGTTTTGTTGACTGTGGTGGTTTGGAGATTTTGGACCTTTGCACAAATAGGCTTCATGGACCCCTTCTGACCCCTATTTGGAAAATCACTACCCTTAAAAAGCTTTACCTGTGTGAAAACTACATGCATGGTGAAGTGCCAGTGGAGCTTGGGAATTTGATATCACTTGAGGAGCTGGTCATTTATAGCAATAATTTAACTGGAAGAATTCCCTCATCAATAAGAAAGTTGAAGCAGCTTAGAGTTATAAGGGCAGGTCTGAATGTCCTCTCGGGGCCAATACCTGCTGAAATTAGTGagtgtgaaagcttggagataTTGGGGTTGGCACAGAATCAGCTAGAAGGTTCCATTCCAAGGGAGCTTCAAAAGCTTCAGAACCTCACCACTATACTTCTTTGGCAAAACTCATTATCTGGGGAGATTCCTCCTGAGATTGGCAGCATTAGTAGCTTGGAACTGCTTGCTTTGCACCAAAATTCACTAAGTGGTTCTGTCCCCAGGGAACTGGGAAAGCTTTCCCAGTTGAAGAGGTTGTACATGTACACCAACCAGTTGAATGGAACACTTCCACCAGAGCTAGGGAACTGCACAAATGCTATTGAGATAGACCTTTCTGAAAACCGTTTGATTGGGAAAATTCCCAAGGAGTTGGGCCTGATCTCTAATCTTAGCTTGCTTCATCTGTTTGAAAACAATCTGGAGGGTCATATTCCAAGGGAGCTTGGTCAGTTGAGCCTGCTAAGAAATTTAGACCTGTCACTTAATAACTTGACAGGTACAATTCCAATGGACTTTCAAAACCTTACATACATGGAGGATTTGCAGCTGTTTGACAATCAACTTGAGGGTGTGATCCCCCCTCATCTTGGAGCTGTTAGAAACCTTACTATTCTTGACATATCTGCAAACAACCTTGTTGGTATGATACCTGTCCATTTTTGTGAATATCAGAAGCTGCAATTCCTGAGCCTTGGGTCAAATAGGTTGTTTGGAAATATTCCTGATAGCCTCAAAACATGCAAATCTCTTGTGCAGCTTATGCTGGGGGACAACCTGTTGACAGGAAGCCTACCTGTGGAATTGTATGAACTTCACAATCTCACTGCACTTGAACTCTATCAGAACAGGTTTTCGGGGATAATAAACCCGGGGATAGGCCAACTCAGGAATCTAGAGAGGCTTCTCTTGTCAGATAACTACTTTGAAGGCTATCTCCCTCCCGAGATTGGAAATTTGGCGCAACTTGTCACATTCAATATTTCCTCGAACCGTTTTAGTGGAAGCATTCCTCATGAGTTGGGAAAATGTGTTAAACTGCAGAGGCTTGATCTTAGCAGGAACAACTTCACTGGCATGCTTCCAAATGAAATTGGCAACCTGGTGAACTTGGAGCTGTTGAAAGTCTCTGATAACATGCTCTCAGGAGAAATTCCAGGCACTCTGGGGAACCTTATTCGCCTCACAGACCTGGAACTAGGTGGCAACCAGTTTTCAGGAAGCATCTCTTTTTACTTGGGAAGACTTGCAGCTCTTCAGATTGCTCTTAACCTGAGCCACAACAAACTTTCTGGCTCAATTCCTGGTAGCCTTGGGAACTTGCAAATGCTGGAGTCCCTTTATCTAAATGACAATCAACTTGTTGGTGAGATTCCTGCATCAATTGGTGACCTTCTCAGTCTTGTAGTATGCAATGTGTCTAACAACAAGCTGGTAGGGACTGTTCCAGACACCACTACATTTAGAAAGATGGATTTCACAAACTTTGCTGGGAACAACGGCTTGTGCCGTGTAGGTACTAGTCATTGTCATCCATCTGTATCTCCCTCTCATGCTGCAAAAAGCTGGATCAGAGATGGTTCATCAAGGGAAAAGATAGTGAGCATTGTTTCTGGGGTGGTTGGACtagtttctcttattttcatagTGTGTATATGTTTGGCCATGAGGCGCCGCAGCCCTGCTGCTTTTGTTTCACTTGAAGGGCAAACAAAGACTCATGTCTTGGATAACTACTACTTTCCTAAAGAAGGCTTTACATACCAGGATCTCTTGGAAGCCACTGGCAATTTTTCAGAAGCTGCAGTTCTAGGAAGAGGTGCTTGTGGCACTGTTTACAAGGCTGTTATGAGTGATGGTGAAGTGATTGCTGTTAAGAAGCTGAATTCGCGTGGAGAAGGAGCAAATAATGTTGACAGAAGCTTCCTTGCTGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATTGTGAAGCTGTATGGATTTTGCTACCATGAGGATTCTAATCTTCTCTTATATGAATACATGGAAAATGGAAGCCTTGGGGAACAACTTCATTCAAGTGCAACCACTTGTGCATTGGATTGGGGTAGTCGATATAAAATAGCTCTTGGAGCGGCAGAAGGCTTATGCTATCTTCACTATGATTGCAAACCTCAAATCATCCATCGTGATATAAAGTCAAACAACATACTACTCGATGAGGTGTTTCAGGCTCACGTTGGAGACTTTGGCTTGGCAAAGTTGATTGATTTTTCCTACTCAAAATCCATGTCTGCTGTGGCTGGTTCATATGGCTACATTGCCCCAGAATATGCTTACACCATGAAGGTGACTGAGAAGTGTGACATCTATAGCTTTGGGGTAGTTTTGCTGGAACTAGTTACTGGGAGGTCACCTGTTCAACCTTTGGAACAAGGTGGTGATTTAGTGACTCGTGTGAGAAGAGCAATTCAAGCATCAGTGCCAACATCTGAATTATTTGACAAGAGATTGAATCTTAGTGCACAGAAGACAGTTGAAGAAATGTCTCTTATTCTCAAAATTGCCTTGTTCTGCACCAGCACATCTCCACTTAATAGGCCTACAATGAGAGAGGTCATTGCAATGTTGACTGATGCTAGGGAATATGTGAGCAACTCACCAACCTCTCCTACATCAGAATCTCCATTGGATGAGGGTGACGGCACTTCTTCCAAAGATGGTGGTCATGAGTTGTAA 3342 0.4249 MMALGCSFHFLNGVYMVLLFCLGIVLVNSVNEEGLSLLRFKASLDPNNNLYNWNSSDLTPCNWTGVYCTGSVVTSVKLYQLNLSGTLVPTICNLPKLLELNLSKNFISGPIPDGFVDCGGLEILDLCTNRLHGPLLTPIWKITTLKKLYLCENYMHGEVPVELGNLISLEELVIYSNNLTGRIPSSIRKLKQLRVIRAGLNVLSGPIPAEISECESLEILGLAQNQLEGSIPRELQKLQNLTTILLWQNSLSGEIPPEIGSISSLELLALHQNSLSGSVPRELGKLSQLKRLYMYTNQLNGTLPPELGNCTNAIEIDLSENRLIGKIPKELGLISNLSLLHLFENNLEGHIPRELGQLSLLRNLDLSLNNLTGTIPMDFQNLTYMEDLQLFDNQLEGVIPPHLGAVRNLTILDISANNLVGMIPVHFCEYQKLQFLSLGSNRLFGNIPDSLKTCKSLVQLMLGDNLLTGSLPVELYELHNLTALELYQNRFSGIINPGIGQLRNLERLLLSDNYFEGYLPPEIGNLAQLVTFNISSNRFSGSIPHELGKCVKLQRLDLSRNNFTGMLPNEIGNLVNLELLKVSDNMLSGEIPGTLGNLIRLTDLELGGNQFSGSISFYLGRLAALQIALNLSHNKLSGSIPGSLGNLQMLESLYLNDNQLVGEIPASIGDLLSLVVCNVSNNKLVGTVPDTTTFRKMDFTNFAGNNGLCRVGTSHCHPSVSPSHAAKSWIRDGSSREKIVSIVSGVVGLVSLIFIVCICLAMRRRSPAAFVSLEGQTKTHVLDNYYFPKEGFTYQDLLEATGNFSEAAVLGRGACGTVYKAVMSDGEVIAVKKLNSRGEGANNVDRSFLAEISTLGKIRHRNIVKLYGFCYHEDSNLLLYEYMENGSLGEQLHSSATTCALDWGSRYKIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDEVFQAHVGDFGLAKLIDFSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVTRVRRAIQASVPTSELFDKRLNLSAQKTVEEMSLILKIALFCTSTSPLNRPTMREVIAMLTDAREYVSNSPTSPTSESPLDEGDGTSSKDGGHEL 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1372 1113 Gene3D Phosphorylase Kinase; domain 1 769 882 - -
Ssu8g1372 1113 Gene3D Ribonuclease Inhibitor 591 717 IPR032675 -
Ssu8g1372 1113 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Ssu8g1372 1113 SMART LRR_typ_2 286 310 IPR003591 -
Ssu8g1372 1113 SMART LRR_typ_2 238 262 IPR003591 -
Ssu8g1372 1113 SMART LRR_typ_2 94 118 IPR003591 -
Ssu8g1372 1113 SMART LRR_typ_2 647 671 IPR003591 -
Ssu8g1372 1113 SMART LRR_typ_2 622 646 IPR003591 -
Ssu8g1372 1113 SMART LRR_typ_2 550 573 IPR003591 -
Ssu8g1372 1113 SMART LRR_typ_2 166 190 IPR003591 -
Ssu8g1372 1113 SMART LRR_typ_2 502 526 IPR003591 -
Ssu8g1372 1113 SMART LRR_typ_2 334 358 IPR003591 -
Ssu8g1372 1113 SMART LRR_typ_2 574 598 IPR003591 -
Ssu8g1372 1113 Gene3D Ribonuclease Inhibitor 477 590 IPR032675 -
Ssu8g1372 1113 Gene3D Transferase(Phosphotransferase) domain 1 883 1095 - -
Ssu8g1372 1113 ProSiteProfiles Protein kinase domain profile. 804 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1372 1113 SUPERFAMILY L domain-like 44 394 - -
Ssu8g1372 1113 SMART serkin_6 804 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1372 1113 Gene3D Ribonuclease Inhibitor 25 82 IPR032675 -
Ssu8g1372 1113 Gene3D Ribonuclease Inhibitor 83 400 IPR032675 -
Ssu8g1372 1113 PANTHER OS07G0152200 PROTEIN 17 1089 - -
Ssu8g1372 1113 ProSitePatterns Serine/Threonine protein kinases active-site signature. 928 940 IPR008271 GO:0004672|GO:0006468
Ssu8g1372 1113 Gene3D Ribonuclease Inhibitor 406 476 IPR032675 -
Ssu8g1372 1113 SUPERFAMILY Protein kinase-like (PK-like) 781 1078 IPR011009 -
Ssu8g1372 1113 MobiDBLite consensus disorder prediction 1084 1113 - -
Ssu8g1372 1113 Pfam Protein kinase domain 806 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1372 1113 Pfam Leucine Rich Repeat 552 574 IPR001611 GO:0005515
Ssu8g1372 1113 SUPERFAMILY RNI-like 363 686 - -
Ssu8g1372 1113 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 1089 - -
Ssu8g1372 1113 MobiDBLite consensus disorder prediction 1084 1100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1372 Ssu-Chr8 26232722 26237157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1372 24 1083 Receptor kinase-like Gene Family AT1G73080 37.432 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu8g1372 Pkinase 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1372 - - gmx:100818311 2014.96